| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0560 |
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| Symbol | |
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| ID | 8224129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dyadobacter fermentans DSM 18053 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013037 |
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| Strand | + |
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| Start bp | 632093 |
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| End bp | 635008 |
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| Gene Length | 2916 bp |
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| Protein Length | 971 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644928436 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003084990 |
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| Protein GI | 255034369 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0108635 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATACTTT CGGCCTGGCA AGCCAGCGCA CAATCCGTGC AGATTACCGG TAAGATCAAA
GACGCCAACG ACGTGCTGCC CGGCGTAGCG ATCGTCGAAA AGGGCACCAA TAACGGAACA
GTGTCTGCTG TGGACGGAAC GTTCAAACTG GATGTAAGCA ATGCCAATGC AACGCTCACG
ATCTCGAATG TAGGTTATGT GACGCAGGAA ATCGCATTGG CGGGCAAGAC TTTCATCGAA
GTCGACCTGG CCGAAGACCA GAAGACGCTG AACGAAGTGG TGGTGATCGG CTATGGCTCG
CTGAACAAAA AGGAGGTTTC CAGCGCCATT ACGCACCTTT CGGGTAAGGA CCTCCTCCGT
GTGGGCGGTA ACAACCCGCT GATGGCCATC CAGGGCAAGG TAGCCGGCCT TTCGGTGGCC
AATACGTCTG CGGCAGACCC CAACTCTTCG CCCAGCATCC AGCTGCGCGG GGCGTCGTCA
AGAAGCGCCG GTTTGGGCCC GTTGTTTGTG ATTAATGGTG TGCCGGGCGG TAACATCGAC
AACATCAACC AGAACGAAAT CGAGTCGATC GACGTCCTCA AAGGCGGCGC AGCGTCAGCC
ATTTACGGTA CGCGGGGCAG CAACGGGGTA ATCGTGATCA CGACCAAAAA GGGATCGGAA
ACTTCGCGTA TATTCTATGA CGGTTACGCC ACTTTCGACT ATGCTACCAA CCAGCTGGAA
GTGCTTTCGA GAGAGGATTT TCTTGCCAAC AAACGCGGAG TCGACTTCGG CGGTAATACC
AACTGGATGA AGGAAGTGAA GCGCAACCCG TCTTTCTCAC ACAAGCATAC CCTGCAATTT
TCGGGCGGAA ACGGCAAAAC AAACTACTTC ACCTCGCTCG ACTACCGCGA TGCGAACGGG
ATAGACCTCC GTTCGGCCAA GCGCGAGTAC GGCGGCCGGA TCAATATCAA CCATAAAACG
GCCAACAACC TTGTTGAGCT GTCGTTTACC GCTGCGCCGC GCTACACCAA GACGAGTGAC
GCGTACTACG CCGGTTTTAA CCACGCACTG ACCCTGAACC CGACGCTCGA CCTGCGCGAC
TCAACCGGCA AATATGCCTA TCTGACATCC GGATTTTTTG CAAATAACCC GGTTGAAGTC
GCGAAGAGCG TCAAGTCCGA CCGCGAGTAC AAGCTGATGG ATTTGAATGG TTCAGCGAAA
ATCAACATTC TTGAAAACCT CAATACCGTG GTGACCATCG GCCAGGTGAA CTCTTCGATG
AGAAGGTATC TATTTTCACC GTCGACGCTC ACGACGATCG TGAATGGCAA CAAACGGAAC
ACCGGCGAGC AAATCCTCGA AGAAAACGAT CAGAAAAGCT TTGAATGGAT CGGTAACTAT
TACCTCGATC TGAACAAGCA TTCCGTCAAG CTGCTGGGCG GCTACTCGTT CCAGTACTTC
ACAGCTTCGG GTTTCAATGC AAAAAATGAG AATTTTCCCT CCAATGTATT GACCTACAAC
AACCTGGGTA GCGGATTGTG GAACTTGCAG GAAGGGATTA ACAATGTCGG TTCTTACAAA
AACTCATCCA AACTGATCGC CTTCTTCGGC CGTTTGAACT ACGATTTCGA CCAGAAATAC
TACCTGTCGG CCAGCTTGCG CCGCGAGGGT TCTTCGAAAT TCGGTTATTC CAATAAATGG
GGTTACTTCC CGGCCGCTTC CGTGGCCTGG CGTGCCACGC AGGAGCAATT CCTGAAAAAC
ATCCCCTGGC TGAACGAACT GAAAGTGCGT GCGGATTATG GCGAGACGGG CAACCAGGAT
TTCGGAAACT ACCTTTCGCT GGATACCTAC GGCGGCTACG GCTACTATTT GTACAATGGC
ATCAACTACC AGGTGTGGGG CCCGAGCCAG AATACCAACT ACGATTTGCG CTGGGAAAAA
GCGGCCAACT TCAATGCCGG TCTGGATTTC GAACTCTTCG GCAGCAAGCT TTCCGGTAGT
TTGAACTACT ACATCCGCAC CAACCGCGAC TTGCTTGGTA ACTATAATGT ATCCAACCCG
CCCAACATCC AGGGACAGAC TTTCGCAAAT GTGGGCACGA TGCGCAACAC CGGTTTCGAG
TTGCAGCTGA ATGCATCGGT ACTTCGGAAA GGCGACTTCA CTTACGACAT CGGTTTCACA
GGCGCTTATA ACAACAACAA ATTTGTTTCC TTCTCGAACT CGCTTTTCCG CGGCCAGAAG
TACGTGGACG TGGTGGGCAT GCCTTCGCCG GGAAGTCCGG GCACATTGCA GCGCTTGCAG
GAAGATACCC GCATCGGCAG CTTCTTTGCC CTCAAATCCG CCGGTGTGAA CGACCAGGGC
GCATTGCTCG TGTACAACAA AAAAGGAGAG GTGATTCCCG GTAACCAGGC CACTGCCGAC
GATAAGCAGT TTGTAGGAAA CGGTTTGCCG AAGTTTACCA TGGGTCTTTC CAATAATTTC
AAATACAAAA ACTGGGACCT GAGCGTGTTC CTGCGCGGCG CATTCGGCTA TGAATTGTTC
AATACCTACG CGTTTTACCT GGGCACGCCA GCCACGCAGG AGAATGCCAA CGTACTGAAA
TCAGCTTATG ATGGTGGCAA ATACTCGAAA CTGACCAGCC CCACGACGTA TTCGGCGCTC
TCGGATTACT TCCTCGAACC GGGCGGGTTT GTGAAAATCG ATAATGTCAC GCTGAGCTAC
ACGCAGCCTA TCCAGACGAA ATTCCTGCAA TCGGTGCGGA TTTACGCAAC GACCCGCAAC
CTGGCGACAT TCACCAAATT CACCGGCGGC GATCCCGACC TGATCAATGT CAATGGCCTG
TACCCGGGCG TGAACAGAAA CAGTGACAAC AACGGTACGC TCGATTACTA CCCGTCGACC
ACCCAGCTGC TGCTCGGCGT TCAGCTTACC TTCTAA
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| Protein sequence | MILSAWQASA QSVQITGKIK DANDVLPGVA IVEKGTNNGT VSAVDGTFKL DVSNANATLT
ISNVGYVTQE IALAGKTFIE VDLAEDQKTL NEVVVIGYGS LNKKEVSSAI THLSGKDLLR
VGGNNPLMAI QGKVAGLSVA NTSAADPNSS PSIQLRGASS RSAGLGPLFV INGVPGGNID
NINQNEIESI DVLKGGAASA IYGTRGSNGV IVITTKKGSE TSRIFYDGYA TFDYATNQLE
VLSREDFLAN KRGVDFGGNT NWMKEVKRNP SFSHKHTLQF SGGNGKTNYF TSLDYRDANG
IDLRSAKREY GGRININHKT ANNLVELSFT AAPRYTKTSD AYYAGFNHAL TLNPTLDLRD
STGKYAYLTS GFFANNPVEV AKSVKSDREY KLMDLNGSAK INILENLNTV VTIGQVNSSM
RRYLFSPSTL TTIVNGNKRN TGEQILEEND QKSFEWIGNY YLDLNKHSVK LLGGYSFQYF
TASGFNAKNE NFPSNVLTYN NLGSGLWNLQ EGINNVGSYK NSSKLIAFFG RLNYDFDQKY
YLSASLRREG SSKFGYSNKW GYFPAASVAW RATQEQFLKN IPWLNELKVR ADYGETGNQD
FGNYLSLDTY GGYGYYLYNG INYQVWGPSQ NTNYDLRWEK AANFNAGLDF ELFGSKLSGS
LNYYIRTNRD LLGNYNVSNP PNIQGQTFAN VGTMRNTGFE LQLNASVLRK GDFTYDIGFT
GAYNNNKFVS FSNSLFRGQK YVDVVGMPSP GSPGTLQRLQ EDTRIGSFFA LKSAGVNDQG
ALLVYNKKGE VIPGNQATAD DKQFVGNGLP KFTMGLSNNF KYKNWDLSVF LRGAFGYELF
NTYAFYLGTP ATQENANVLK SAYDGGKYSK LTSPTTYSAL SDYFLEPGGF VKIDNVTLSY
TQPIQTKFLQ SVRIYATTRN LATFTKFTGG DPDLINVNGL YPGVNRNSDN NGTLDYYPST
TQLLLGVQLT F
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