Gene Dfer_0338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0338 
Symbol 
ID8223904 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp388790 
End bp390496 
Gene Length1707 bp 
Protein Length568 aa 
Translation table11 
GC content55% 
IMG OID644928216 
ProductPAS/PAC sensor signal transduction histidine kinase 
Protein accessionYP_003084773 
Protein GI255034152 
COG category[T] Signal transduction mechanisms 
COG ID[COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.127973 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00024777 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGGATTTAC GTAGCCCCGC AAACGATCAG TTTTTTCATT TCATTCAGGG TGGCGGCGAA 
ATGGGTGCCC TGACGAGGGC TTTCGATTGG TCGGCCACGG CAATCGGGCC GCCGGAGCAA
TGGCAGCAAA GCCTGCGTAC TACACTCGGC ATCGTGCTGA ACTCCGCATT TCCGATGTTC
CTCTTCTGGG GCGATGAGCT CATCTGCTTT TATAATGACG CATTCAGGCC CAGCCTCGGT
GCCGAAGGCA AACATCCCGC GCTGGGCAAA CGCGGCAGGG AAGTGTGGCC TGAAATCTGG
GATTTTATCG GGCCATTGCT CGGCCGGGTG ATGAGCAGCG GAGAGCCCGT CTGGTTTGAG
GACCAGCTCG TGCCGTTTTT CAGGAATGGC AGGGTGGAGG ATATTTACTG GACGTTCAGT
TACAGCCCGG TTTACGACGA TTCGGGGAAG ATCAACGGGG TGTTCGTTAC CTGCACCGAA
ACCACGCAGA AAGTGCTCAT GTACAACCGC CTGCACGACT CCGAGCGGCG CTTTCAAAAC
CTCGTTACGG ACGCAACGGT GGGGATAATC GTACTCATGG GCACGGACAT GGTCGTGGAG
ATTGTCAACG ATGCCTACGG CCAGGTGATC GACCGCTCCC GCGAGGAACT GCTTGATAAG
CCTTTTTTTT CGGTGGTACC GGAAACCGAG CCGCATTTCC GGAACATCGT CGAGGGGGTA
ATGCGGACCG GAGAACCGCT CTACCTGTAC GATCATCCCT ATTTTGTATA TGTTAATGGA
GAGAAAAAAG AAGGTTATCT GAACCTGGTG TATCAGCCTT ACCGTGGCGA CGATGGCCGC
ATTCAGGGGG TGATGGTTCT TTGCCAGGAG GTCACGGAAC TGGTGCTCGC CAAATTACGC
ACCGAACAGA CCGTGACCGA CCGCACACGG GAGCTCGCTA CCGCCAACCG CCATTTGCAG
CGCTCGAATG CCGAGCTGGC GCAGTTTGCC TACATCGCTT CGCACGACCT TCAGGAGCCC
ATCCGGAAGG TCGCGACATT TGCCCAGCTG CTTGAAGGCG CATTGGGCGA GACGACCGAG
CGCCAGCGGA ATTACCTTGA TAAGATCAAA AATGCCTCTG CGCGGATGAT GCTATTGATC
CGCGATGTGC TCACATTTTC GCAGCTGTCA CGGGATACCG ACCTGGTGCG GGAAACCGAT
CTGGGCGTGG TGCTGGACAA TGTTGTGGAC GATCTCGAAC TGCTGATCGA CCAGAAGCAC
GCAACCGTGA GTTACGAGAA CCTTCCGGTG GTGGAGGCCG TTCCGCTGCA AATGTCTCAG
CTGTTTGGGA ACCTCATTTC CAATGCCTTG AAATTCACCA GGGCCGATCG CGACCCGGTC
ATCCGCATTA CGGCAAAACT GCTCGACAGG CAAGAGTTAC GTTCGTACCC GATGCTCGAT
ACCCGTTGCG CCTATCACCA TTTGCAGGTG AGCGACAATG GTATTGGATT CGACCAGAGC
TACGCCGAGC AGATATTCGA GATTTTCCAG CGACTGCACG GGAAAAAGGA CTTCGAAGGG
ACGGGCATTG GGCTGGCCAT GTGCAAGAAG ATCCTGCAAA ACCATCACGG CCTTATTTTC
GCCACTTCGG GAGAAGGAGA GGGCGCCACT TTCCATATGC TCATCCCTGA AAATCAGTCT
TGTTTCGCGG ATTCGTCGAT ACTTTAA
 
Protein sequence
MDLRSPANDQ FFHFIQGGGE MGALTRAFDW SATAIGPPEQ WQQSLRTTLG IVLNSAFPMF 
LFWGDELICF YNDAFRPSLG AEGKHPALGK RGREVWPEIW DFIGPLLGRV MSSGEPVWFE
DQLVPFFRNG RVEDIYWTFS YSPVYDDSGK INGVFVTCTE TTQKVLMYNR LHDSERRFQN
LVTDATVGII VLMGTDMVVE IVNDAYGQVI DRSREELLDK PFFSVVPETE PHFRNIVEGV
MRTGEPLYLY DHPYFVYVNG EKKEGYLNLV YQPYRGDDGR IQGVMVLCQE VTELVLAKLR
TEQTVTDRTR ELATANRHLQ RSNAELAQFA YIASHDLQEP IRKVATFAQL LEGALGETTE
RQRNYLDKIK NASARMMLLI RDVLTFSQLS RDTDLVRETD LGVVLDNVVD DLELLIDQKH
ATVSYENLPV VEAVPLQMSQ LFGNLISNAL KFTRADRDPV IRITAKLLDR QELRSYPMLD
TRCAYHHLQV SDNGIGFDQS YAEQIFEIFQ RLHGKKDFEG TGIGLAMCKK ILQNHHGLIF
ATSGEGEGAT FHMLIPENQS CFADSSIL