| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dfer_0338 |
|---|
| Symbol | |
|---|
| ID | 8223904 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dyadobacter fermentans DSM 18053 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013037 |
|---|
| Strand | + |
|---|
| Start bp | 388790 |
|---|
| End bp | 390496 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644928216 |
|---|
| Product | PAS/PAC sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_003084773 |
|---|
| Protein GI | 255034152 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.127973 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00024777 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTAC GTAGCCCCGC AAACGATCAG TTTTTTCATT TCATTCAGGG TGGCGGCGAA
ATGGGTGCCC TGACGAGGGC TTTCGATTGG TCGGCCACGG CAATCGGGCC GCCGGAGCAA
TGGCAGCAAA GCCTGCGTAC TACACTCGGC ATCGTGCTGA ACTCCGCATT TCCGATGTTC
CTCTTCTGGG GCGATGAGCT CATCTGCTTT TATAATGACG CATTCAGGCC CAGCCTCGGT
GCCGAAGGCA AACATCCCGC GCTGGGCAAA CGCGGCAGGG AAGTGTGGCC TGAAATCTGG
GATTTTATCG GGCCATTGCT CGGCCGGGTG ATGAGCAGCG GAGAGCCCGT CTGGTTTGAG
GACCAGCTCG TGCCGTTTTT CAGGAATGGC AGGGTGGAGG ATATTTACTG GACGTTCAGT
TACAGCCCGG TTTACGACGA TTCGGGGAAG ATCAACGGGG TGTTCGTTAC CTGCACCGAA
ACCACGCAGA AAGTGCTCAT GTACAACCGC CTGCACGACT CCGAGCGGCG CTTTCAAAAC
CTCGTTACGG ACGCAACGGT GGGGATAATC GTACTCATGG GCACGGACAT GGTCGTGGAG
ATTGTCAACG ATGCCTACGG CCAGGTGATC GACCGCTCCC GCGAGGAACT GCTTGATAAG
CCTTTTTTTT CGGTGGTACC GGAAACCGAG CCGCATTTCC GGAACATCGT CGAGGGGGTA
ATGCGGACCG GAGAACCGCT CTACCTGTAC GATCATCCCT ATTTTGTATA TGTTAATGGA
GAGAAAAAAG AAGGTTATCT GAACCTGGTG TATCAGCCTT ACCGTGGCGA CGATGGCCGC
ATTCAGGGGG TGATGGTTCT TTGCCAGGAG GTCACGGAAC TGGTGCTCGC CAAATTACGC
ACCGAACAGA CCGTGACCGA CCGCACACGG GAGCTCGCTA CCGCCAACCG CCATTTGCAG
CGCTCGAATG CCGAGCTGGC GCAGTTTGCC TACATCGCTT CGCACGACCT TCAGGAGCCC
ATCCGGAAGG TCGCGACATT TGCCCAGCTG CTTGAAGGCG CATTGGGCGA GACGACCGAG
CGCCAGCGGA ATTACCTTGA TAAGATCAAA AATGCCTCTG CGCGGATGAT GCTATTGATC
CGCGATGTGC TCACATTTTC GCAGCTGTCA CGGGATACCG ACCTGGTGCG GGAAACCGAT
CTGGGCGTGG TGCTGGACAA TGTTGTGGAC GATCTCGAAC TGCTGATCGA CCAGAAGCAC
GCAACCGTGA GTTACGAGAA CCTTCCGGTG GTGGAGGCCG TTCCGCTGCA AATGTCTCAG
CTGTTTGGGA ACCTCATTTC CAATGCCTTG AAATTCACCA GGGCCGATCG CGACCCGGTC
ATCCGCATTA CGGCAAAACT GCTCGACAGG CAAGAGTTAC GTTCGTACCC GATGCTCGAT
ACCCGTTGCG CCTATCACCA TTTGCAGGTG AGCGACAATG GTATTGGATT CGACCAGAGC
TACGCCGAGC AGATATTCGA GATTTTCCAG CGACTGCACG GGAAAAAGGA CTTCGAAGGG
ACGGGCATTG GGCTGGCCAT GTGCAAGAAG ATCCTGCAAA ACCATCACGG CCTTATTTTC
GCCACTTCGG GAGAAGGAGA GGGCGCCACT TTCCATATGC TCATCCCTGA AAATCAGTCT
TGTTTCGCGG ATTCGTCGAT ACTTTAA
|
|---|
| Protein sequence | MDLRSPANDQ FFHFIQGGGE MGALTRAFDW SATAIGPPEQ WQQSLRTTLG IVLNSAFPMF
LFWGDELICF YNDAFRPSLG AEGKHPALGK RGREVWPEIW DFIGPLLGRV MSSGEPVWFE
DQLVPFFRNG RVEDIYWTFS YSPVYDDSGK INGVFVTCTE TTQKVLMYNR LHDSERRFQN
LVTDATVGII VLMGTDMVVE IVNDAYGQVI DRSREELLDK PFFSVVPETE PHFRNIVEGV
MRTGEPLYLY DHPYFVYVNG EKKEGYLNLV YQPYRGDDGR IQGVMVLCQE VTELVLAKLR
TEQTVTDRTR ELATANRHLQ RSNAELAQFA YIASHDLQEP IRKVATFAQL LEGALGETTE
RQRNYLDKIK NASARMMLLI RDVLTFSQLS RDTDLVRETD LGVVLDNVVD DLELLIDQKH
ATVSYENLPV VEAVPLQMSQ LFGNLISNAL KFTRADRDPV IRITAKLLDR QELRSYPMLD
TRCAYHHLQV SDNGIGFDQS YAEQIFEIFQ RLHGKKDFEG TGIGLAMCKK ILQNHHGLIF
ATSGEGEGAT FHMLIPENQS CFADSSIL
|
|---|
| |