Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dfer_0230 |
Symbol | |
ID | 8223796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dyadobacter fermentans DSM 18053 |
Kingdom | Bacteria |
Replicon accession | NC_013037 |
Strand | - |
Start bp | 257332 |
End bp | 259071 |
Gene Length | 1740 bp |
Protein Length | 579 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644928109 |
Product | glucose-methanol-choline oxidoreductase |
Protein accession | YP_003084666 |
Protein GI | 255034045 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.118413 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.242955 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTTCAAA TCAAAGAACA ACCTGCCGTT TTCGACGTCG CCATTATCGG GTCGGGCGCG GGAGGCGGAA TGGCAGCTTA TCAACTTGCC AAAGCAGGTG CCAAGGTGGC TCTTTTGGAA GCAGGTGGAT ATTTCGACCC TGCCGATCCC AAATACATTA CCCAGCTGAA ATGGCCGTAC GAATCGCCCC GCCGTGGTGC GAGCAACCAC CGCCCTTTCG GTGACTTTGA TGCTGCCTGG GGTGGCTGGG AAATTGAGGG AGAACCCTAT ACACACAAGA ACGGTACGCA ATTCGACTGG TTCAGGTCCC GCATGCTCGG TGGCCGTACC AACCACTGGG GCCGCATTTC CCTGCGTTTC GGACCAAAAG ATTTTAAAAG AAAAAGCATC GACGGCCTGG GCGACGACTG GCCGATCAGC TACGACGATG TGAAGCCTTA CTACGACCAG GTCGATAAAC TGATCGGTGT TTTCGGGACT GTCGAGGGCA TTGACAATGA GCCGGACGGC ATCTTCCTGC CGCCTCCCAA GCCACGTTTG CACGAGCTTT TCCTGAAACA GGCGGGTAAA AAGGCCAACA TCCCAGTTAT CCCATCGCGT TTGTCGATCC TTACCAAGCC GATCAATGAC CAGCGCGGGG TGTGTTTCTA TTGCAGTCAG TGCTCGCGCG CGTGCCAGGC TTACGCGGAT TTCTCGTCGT CGTCGGTACT GTGTATTCCC GCGATCAAAA CCGGTAACGT AACCCTGATC AATAACGCGA TGTGCCGCGA GGTGCTTACC GATCCTTCAA CAGGACTTGC CACTGGTGTA TCGTACATTG ACCGTGAAAA ATTAACCGAG CATACTGTAA AAGCCAAAGT AGTAGTTCTG GCAGCGAGCG CGGCGGAATC CTCACGTTTG CTTTTGAACT CAAAATCGGC CCGTCACCCG AACGGCCTCG CCAATTCCAG CGGCGTAGTA GGCCGTTACC TGCACGATTC AACCGGTGCA TCACGCGGCG CATTCCTCCC CCACCTCATG GACCGCAAGC GCTACAATGA GGACGGTGTA GGCGGTATGC ACGTGTACAC GCCATGGTGG CTAGACAACA AGAAACTCGA CTTCCCACGC GGCTACCACA TCGAGTACGG CGGCGGAATG GGCATGCCGA GCTACGGTTT CGGCTCAGGA ATTGAGAATT TGAATGGTAA ATATCCAACC AAAGCGGGTG TTACCAAAGA AGCGGGCGGC TATGGCGCTT CGCTGAAAGA AGATTACCGT CGTTTCTACG GGGCCAACAT CGGTATGGCC GGTCGCGGCG AGGCGGTGCC TGATTATAAC AACTACTGCG AAATCGACCC GAATGTGGTG GATAAATTCG GTATCCCGGT ATTGCGCTTC CACTACAAAT GGTCTGATTA TGAGATCAAA CAGGCGAAGC ACATGCACGA TACCTTCGAG GAAATGATCC ATGCATTGGG CGGTGTGGCC AACGGCACCA AGCCGGGTGC GGATACCAAC TACGGCCTCG CAGCTCCGGG ACGGATCATC CACGAAGTAG GAACCGTTCG CATGGGCGAC GACCAGAAAA CTTCCGCATT GAACAAGTTC TCGCAGGCAC ACGACGCGAA AAACGTGTTT GTGGTAGACG GCGGATCGTT CGTATCCCAG GCCGACAAAA ATCCGACCTG GACCATCCTC GCACTCTCGA TGCGTGCGTC GGAGTACATT ATCAATCAGG TTAAACAGAA AAATATCTAA
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Protein sequence | MFQIKEQPAV FDVAIIGSGA GGGMAAYQLA KAGAKVALLE AGGYFDPADP KYITQLKWPY ESPRRGASNH RPFGDFDAAW GGWEIEGEPY THKNGTQFDW FRSRMLGGRT NHWGRISLRF GPKDFKRKSI DGLGDDWPIS YDDVKPYYDQ VDKLIGVFGT VEGIDNEPDG IFLPPPKPRL HELFLKQAGK KANIPVIPSR LSILTKPIND QRGVCFYCSQ CSRACQAYAD FSSSSVLCIP AIKTGNVTLI NNAMCREVLT DPSTGLATGV SYIDREKLTE HTVKAKVVVL AASAAESSRL LLNSKSARHP NGLANSSGVV GRYLHDSTGA SRGAFLPHLM DRKRYNEDGV GGMHVYTPWW LDNKKLDFPR GYHIEYGGGM GMPSYGFGSG IENLNGKYPT KAGVTKEAGG YGASLKEDYR RFYGANIGMA GRGEAVPDYN NYCEIDPNVV DKFGIPVLRF HYKWSDYEIK QAKHMHDTFE EMIHALGGVA NGTKPGADTN YGLAAPGRII HEVGTVRMGD DQKTSALNKF SQAHDAKNVF VVDGGSFVSQ ADKNPTWTIL ALSMRASEYI INQVKQKNI
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