Gene Dfer_0230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDfer_0230 
Symbol 
ID8223796 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDyadobacter fermentans DSM 18053 
KingdomBacteria 
Replicon accessionNC_013037 
Strand
Start bp257332 
End bp259071 
Gene Length1740 bp 
Protein Length579 aa 
Translation table11 
GC content54% 
IMG OID644928109 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_003084666 
Protein GI255034045 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.118413 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.242955 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTTCAAA TCAAAGAACA ACCTGCCGTT TTCGACGTCG CCATTATCGG GTCGGGCGCG 
GGAGGCGGAA TGGCAGCTTA TCAACTTGCC AAAGCAGGTG CCAAGGTGGC TCTTTTGGAA
GCAGGTGGAT ATTTCGACCC TGCCGATCCC AAATACATTA CCCAGCTGAA ATGGCCGTAC
GAATCGCCCC GCCGTGGTGC GAGCAACCAC CGCCCTTTCG GTGACTTTGA TGCTGCCTGG
GGTGGCTGGG AAATTGAGGG AGAACCCTAT ACACACAAGA ACGGTACGCA ATTCGACTGG
TTCAGGTCCC GCATGCTCGG TGGCCGTACC AACCACTGGG GCCGCATTTC CCTGCGTTTC
GGACCAAAAG ATTTTAAAAG AAAAAGCATC GACGGCCTGG GCGACGACTG GCCGATCAGC
TACGACGATG TGAAGCCTTA CTACGACCAG GTCGATAAAC TGATCGGTGT TTTCGGGACT
GTCGAGGGCA TTGACAATGA GCCGGACGGC ATCTTCCTGC CGCCTCCCAA GCCACGTTTG
CACGAGCTTT TCCTGAAACA GGCGGGTAAA AAGGCCAACA TCCCAGTTAT CCCATCGCGT
TTGTCGATCC TTACCAAGCC GATCAATGAC CAGCGCGGGG TGTGTTTCTA TTGCAGTCAG
TGCTCGCGCG CGTGCCAGGC TTACGCGGAT TTCTCGTCGT CGTCGGTACT GTGTATTCCC
GCGATCAAAA CCGGTAACGT AACCCTGATC AATAACGCGA TGTGCCGCGA GGTGCTTACC
GATCCTTCAA CAGGACTTGC CACTGGTGTA TCGTACATTG ACCGTGAAAA ATTAACCGAG
CATACTGTAA AAGCCAAAGT AGTAGTTCTG GCAGCGAGCG CGGCGGAATC CTCACGTTTG
CTTTTGAACT CAAAATCGGC CCGTCACCCG AACGGCCTCG CCAATTCCAG CGGCGTAGTA
GGCCGTTACC TGCACGATTC AACCGGTGCA TCACGCGGCG CATTCCTCCC CCACCTCATG
GACCGCAAGC GCTACAATGA GGACGGTGTA GGCGGTATGC ACGTGTACAC GCCATGGTGG
CTAGACAACA AGAAACTCGA CTTCCCACGC GGCTACCACA TCGAGTACGG CGGCGGAATG
GGCATGCCGA GCTACGGTTT CGGCTCAGGA ATTGAGAATT TGAATGGTAA ATATCCAACC
AAAGCGGGTG TTACCAAAGA AGCGGGCGGC TATGGCGCTT CGCTGAAAGA AGATTACCGT
CGTTTCTACG GGGCCAACAT CGGTATGGCC GGTCGCGGCG AGGCGGTGCC TGATTATAAC
AACTACTGCG AAATCGACCC GAATGTGGTG GATAAATTCG GTATCCCGGT ATTGCGCTTC
CACTACAAAT GGTCTGATTA TGAGATCAAA CAGGCGAAGC ACATGCACGA TACCTTCGAG
GAAATGATCC ATGCATTGGG CGGTGTGGCC AACGGCACCA AGCCGGGTGC GGATACCAAC
TACGGCCTCG CAGCTCCGGG ACGGATCATC CACGAAGTAG GAACCGTTCG CATGGGCGAC
GACCAGAAAA CTTCCGCATT GAACAAGTTC TCGCAGGCAC ACGACGCGAA AAACGTGTTT
GTGGTAGACG GCGGATCGTT CGTATCCCAG GCCGACAAAA ATCCGACCTG GACCATCCTC
GCACTCTCGA TGCGTGCGTC GGAGTACATT ATCAATCAGG TTAAACAGAA AAATATCTAA
 
Protein sequence
MFQIKEQPAV FDVAIIGSGA GGGMAAYQLA KAGAKVALLE AGGYFDPADP KYITQLKWPY 
ESPRRGASNH RPFGDFDAAW GGWEIEGEPY THKNGTQFDW FRSRMLGGRT NHWGRISLRF
GPKDFKRKSI DGLGDDWPIS YDDVKPYYDQ VDKLIGVFGT VEGIDNEPDG IFLPPPKPRL
HELFLKQAGK KANIPVIPSR LSILTKPIND QRGVCFYCSQ CSRACQAYAD FSSSSVLCIP
AIKTGNVTLI NNAMCREVLT DPSTGLATGV SYIDREKLTE HTVKAKVVVL AASAAESSRL
LLNSKSARHP NGLANSSGVV GRYLHDSTGA SRGAFLPHLM DRKRYNEDGV GGMHVYTPWW
LDNKKLDFPR GYHIEYGGGM GMPSYGFGSG IENLNGKYPT KAGVTKEAGG YGASLKEDYR
RFYGANIGMA GRGEAVPDYN NYCEIDPNVV DKFGIPVLRF HYKWSDYEIK QAKHMHDTFE
EMIHALGGVA NGTKPGADTN YGLAAPGRII HEVGTVRMGD DQKTSALNKF SQAHDAKNVF
VVDGGSFVSQ ADKNPTWTIL ALSMRASEYI INQVKQKNI