Gene GM21_3832 details

Gene Information

• Locus tag: GM21_3832
• ID: 8139206
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Geobacter sp. M21
• Kingdom: Bacteria
• Replicon accession: NC_012918
• Strand: -
• Start bp: 4415927
• End bp: 4417993
• Gene Length: 2067 bp
• Protein Length: 688 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644871449
• Product: TPR repeat-containing protein
• Protein accession: YP_003023607
• Protein GI: 253702418
• COG category: [R] General function prediction only
• COG ID: [COG0457] FOG: TPR repeat

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: 51
• Fosmid unclonability p-value: 0.00173771
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGAAGGTGG CGCTCGTCTG GCGCGGCAAC CCGGCCCACG GCAACGACGC CAACCGCTCG 
ATACCGCTCG CCAAACTGGC GCCGCTTGCT GAAGTCCCCG GCGTGAGCTT CTATTCCCTG 
CAGGTGGGAG AGGCCGCGCG GGCGGAGCTT CCGGGCCCCT TCCCGATCGT CGACCTGGCG 
CCTCACATCG AGGATTTCGC CGACACGGCG GCGCTTGCCG GAGAGCTCGA CCTGGTCGTC 
TGCGTCGACA CCTCGGTGGC GCACCTGTGC GGCGCGCTCG GGGTGCCGGT CTGGCTCCTG 
GTCCCCCTGG TCCCGGACTG GCGCTGGGGC CTTTACCGCG ACGACTCCCC CTGGTACCCG 
ACCCTGCGCC TTTTCCGCCA AAGGCAGGCG GGAGAATGGG AAGAGGTGGT GGCCCGGGTC 
AAGGAGGCGC TGGCGCGGGA GGCGTCCCCC GCTTCCGTTT CCCCGCAGGC GCTCCACGCC 
GATGCCCGGG GAGAGGCCGA GATCTGGAAC AACCGGGGGT GCGCCGAGGC CGCCGCCGGC 
AGGCACCTGG AAGCGGTGGA GAGCTACCGC GAGGCGATCG CCCTCGCCCC CGATCTCATG 
CCCGCCCATT ACAACCTCGG CAACAGCCTC TACGCCCTGG GAAGAATCGC CGAGGCGGCC 
GAAAGCTACC GCTGGGCCCT GGCTCTCGAT CCGGCGCTGC CGCAGGGGTG GCACAACCTC 
TCTCTCGCCC TCAAGGCGCA GGGGGCGCTG GACGAGGCGC TGCATGCGCT GAGAAGGGCG 
CTGCGGATCG CCCCGGATTA CCTGGAGGCC AGGCACACCC AGGGCGAGCT GCACCACGAG 
CGCGGCGAGC TGGATGAGGC GCAGGCTTGT TTCCGCGAGA ACCTCTCCCG CGATCCCGGC 
TACCTCCCTT CGTGGAACGC ACTGGGAATC TCGCTGCAGC TGCAGGGGCT TTTGGAGGAG 
GCGGTGGATT GCTACCAAAA GGCGCTCGCC CTGAAGCCGG ATTACCTGCA CGCCCTGAAC 
AACCTGGGGA CGGCGAGCCG CTCGCTCGGG CTTTTGGAGC AGGCGAAAGC GTGCTACCTG 
AGGGTGCTGG AGATCGACGA AGGGTACGCC GACGCCCGCT GGAACCTGGC CCTGGTGCAG 
CTGCAACTGG GAGAGTACCG GGAGGGGTGG CAGGGATACG AGTGCCGCTT CAGCAACGTC 
GACCCCATTC CCAGGCTGGA ATTTCCCCGG CCGCTTTGGG CCGGCGGGAG CCTTGAAGGG 
CGTACCATAC TCCTCACCAG CGAGCAGGGT TTCGGCGACA CCTTCCAATT CGTGCGCTAC 
GCGAAGCTCC TGGCACAGGG GGGCGCGACG GTGCTGGTGC AGGCGCAGAG CGAGGCGATC 
GCGCCGGTGA TCGCGACCGT ACCCGGCGTC GCCCGCGTGC TGGTCCGGGG GGAGCCGCTC 
CCCGAGTTCG ACTGCCACGC TCCCCTGATG AGCCTGCCTT ATCTGTGCGG GACGGAGCTC 
GCCTGCATTC CCGCCGAGAT ACCGTACCTC TTCGCCGACC CGGCGCTGGT TAAGAAGTGG 
AGCCCGCTCC TCTCAGGTGA GAGGCTCCGG GTGGGGCTCG TCTGGGCGGG GAGAAAGAGC 
TACAAGGACG ACCTGAAGCG CTCGCTGTCG CTGCCGCTCT TCGAGCCGCT CTCGAAGGTG 
GCCGGCGCCG ATTTCTTCGC CCTCCAGGTG GGAGACGGGG CGGAGCAGGC GGCCATCCCG 
CCGCCGGGGG TGAAGCTCAC CGACCTTGGG TGCAACATCA GGAACTTCGC CGATACCGCC 
GCGGTGCTTA CCCGGCTCGA TCTGGTGATC ACGGCCGACA CCGCGGTGGC CCATCTTGCC 
GGGGGGCTCG GGGTGCCGGC CTGGGTCCTG CTACCGGTGG GATGCGACTG GCGCTGGCTC 
GCCGAAAGGG AAGACTCCCC CTGGTACCCG GGCGCGCGGC TTTTCCGGCA GACGCGCCGC 
GGCGACTGGA ACGAGGTGCT GCAGCGCGTC GCCGACTGTC TGGCGACGAT GGTCCCCAAG 
GGGGGGCAAC GGAACAGGGA GAGCTGA 

 

Protein sequence

MKVALVWRGN PAHGNDANRS IPLAKLAPLA EVPGVSFYSL QVGEAARAEL PGPFPIVDLA 
PHIEDFADTA ALAGELDLVV CVDTSVAHLC GALGVPVWLL VPLVPDWRWG LYRDDSPWYP 
TLRLFRQRQA GEWEEVVARV KEALAREASP ASVSPQALHA DARGEAEIWN NRGCAEAAAG 
RHLEAVESYR EAIALAPDLM PAHYNLGNSL YALGRIAEAA ESYRWALALD PALPQGWHNL 
SLALKAQGAL DEALHALRRA LRIAPDYLEA RHTQGELHHE RGELDEAQAC FRENLSRDPG 
YLPSWNALGI SLQLQGLLEE AVDCYQKALA LKPDYLHALN NLGTASRSLG LLEQAKACYL 
RVLEIDEGYA DARWNLALVQ LQLGEYREGW QGYECRFSNV DPIPRLEFPR PLWAGGSLEG 
RTILLTSEQG FGDTFQFVRY AKLLAQGGAT VLVQAQSEAI APVIATVPGV ARVLVRGEPL 
PEFDCHAPLM SLPYLCGTEL ACIPAEIPYL FADPALVKKW SPLLSGERLR VGLVWAGRKS 
YKDDLKRSLS LPLFEPLSKV AGADFFALQV GDGAEQAAIP PPGVKLTDLG CNIRNFADTA 
AVLTRLDLVI TADTAVAHLA GGLGVPAWVL LPVGCDWRWL AEREDSPWYP GARLFRQTRR 
GDWNEVLQRV ADCLATMVPK GGQRNRES