Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_4286 |
Symbol | pgaB |
ID | 8135289 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 4851508 |
End bp | 4853523 |
Gene Length | 2016 bp |
Protein Length | 671 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644867608 |
Product | outer membrane N-deacetylase |
Protein accession | YP_003019836 |
Protein GI | 253690646 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCATTCA TACGACTACG AAACGTTATG CTGCTGCTGG GGGTGTTAAT GCTCACCGCC TGCGCACATT CCGTTGACGT GAAATATAGC TCACCCGCAG AACGCCCGGT TTTGGTCAAG GAACAGCCGT GGAAAGCCAA TCAATATATC GTTATTGCCT ATCACGATGT GGCAGATAAT GGAGCCGATC AACGTTTCAT GGCGGTACGC ACCAGCGCAC TGAATGAACA CTTTGCCTGG TTGAGGGAAA ATGGTTACCA CCCGGTATCC GTTGATGACA TTCTGGCTGC GGGCGCAGGG GGGAAACCGC TACCAGACAG GGCGGTGCTA CTGACATTTG ATGATGGTTA CAGCAGTTTT TATCATCGCG TTTACCCTCT GCTGAAAGCC TATGATTGGC CGGCAGTACT GGCACCCGTA GGGCGCTGGC TGGACACACC TGAAGATCAG CCGGTGGATT TTAGTGGTGT TCAAATACCT CGCAACCATT TTCTGACCTG GCAGCAAGTC GGTGAAATGG CGCAATCTGG CCTGGTAGAA ATTGGTGCCC ATACCTATGA CTTACATAAA GGGATTCAGG CAAACCCGCA GGGCAACATG GAACCCGCCG CCGTTACTCG TCAGTATTTT CCTGAGAGCA AGCGATACGA AACGCGAGAT GAGTATCGTA AACGTTTTGC GCATGATACG AATCTCATTA CTAAAAGGAT CGCTGACGCG ACGGGGAAAA AGCCTCGGGT TTGGGTTTGG CCTTATGGTG CGGTAGGAGG CGATGCTCTA AACATCGTTA AGCAACAGGG TTATCAGCTG GCACTCACGC TTAAAAATGG GCCCGCATCA ACCGACTCAC CCTATAGCGT TCCTCGCATA CTGATTAACA ACAATCCCGA TGTACAGCAG TTTGCGCTGT TGGTTAGCTA TGTCCGTGAA CCTGAGGTGA TACGGGTTGC GCATATCGAT CTGGATTATG TTTATGACAC CGATAAAGCG CAGCAGTCTC GTAATGTCGA TGCATTAGTT CAGCGCATTG CCGACTTGCG TATTAATACC GTCTATCTTC AGGCTTTCTC CGATCCGAAA GGAGATGGCA ACGTAAAGTC ACTCTACTTC CCTAATCGTT GGATGCCCGT TCGAGAAGAT TTATTCAATC ATGTGGCCTG GCAGCTAGCA TCGCGAGCGC TTGTTCGCGT TTATGCCTGG ATGCCGGTAC TGGCCTTTGA TATGGATGAT GAAACGTTGC CGCGCGTTGA GCGGATTGAC AGCGAGAGCG GCCAGCGAAG TATCAACCGT AGCCAATATA GACGTTTATC GCTATGGGAT GCGGAAGCCA GAAGACGAAT TAGTGATATC TATGAAGATC TTTCTGCCTA CGCCATGTTC GAGGGCATCT TATTTCATGA TGATGCCGTG CTGGCAGAGG ATGAAGATGC AAGCCATTCG GCGATGCAGG CATATCGGAA GGCTGGATTC CCCGACTCGA TTGCCAGCAT TCGTCGTGAC CCCGAGCTTA ATGCACGCTG GACGCGGTTT AAAAGTAAAG CGCTAACGGA CTTTACGCTC GACCTGGCGG CCCGTGTGCG TGACATTCGT GGCCCGCAAG TTCGTACCGC ACGTAACATT TTCGCATTAC CGATTATTGA ACCGGAAAGT GAAGCATGGT TCTCCCAAAA TCTGGATGAC TTCCTTGCCG CTTATGATTG GGTTGCCCCC ATGGCGATGC CATTGATGGA AAACATCGCG CCCAAGGACA GCAATGCGTG GTTGCAAAAG ATGGTACAAG AAGTAGCTCG TCGCCCTGGC GCGCTGAATA AAACGGTTTT TGAACTTCAG GCTCGGGATT GGCGTGTCCC GGAAGAGCCG TGGTTAGACA CCGAACAATT GGTTAAATGG ATGACCGTGT TGCAACTGAA TGGTGCGCAA AATTACGGTT ACTATCCGGA TGATTTTCTT AACAATTCAC CTGAATTGGA AAGCATCCGC CCCATGATTT CACCAGAATG GTATCCACTG CCATGA
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Protein sequence | MSFIRLRNVM LLLGVLMLTA CAHSVDVKYS SPAERPVLVK EQPWKANQYI VIAYHDVADN GADQRFMAVR TSALNEHFAW LRENGYHPVS VDDILAAGAG GKPLPDRAVL LTFDDGYSSF YHRVYPLLKA YDWPAVLAPV GRWLDTPEDQ PVDFSGVQIP RNHFLTWQQV GEMAQSGLVE IGAHTYDLHK GIQANPQGNM EPAAVTRQYF PESKRYETRD EYRKRFAHDT NLITKRIADA TGKKPRVWVW PYGAVGGDAL NIVKQQGYQL ALTLKNGPAS TDSPYSVPRI LINNNPDVQQ FALLVSYVRE PEVIRVAHID LDYVYDTDKA QQSRNVDALV QRIADLRINT VYLQAFSDPK GDGNVKSLYF PNRWMPVRED LFNHVAWQLA SRALVRVYAW MPVLAFDMDD ETLPRVERID SESGQRSINR SQYRRLSLWD AEARRRISDI YEDLSAYAMF EGILFHDDAV LAEDEDASHS AMQAYRKAGF PDSIASIRRD PELNARWTRF KSKALTDFTL DLAARVRDIR GPQVRTARNI FALPIIEPES EAWFSQNLDD FLAAYDWVAP MAMPLMENIA PKDSNAWLQK MVQEVARRPG ALNKTVFELQ ARDWRVPEEP WLDTEQLVKW MTVLQLNGAQ NYGYYPDDFL NNSPELESIR PMISPEWYPL P
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