| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3954 |
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| Symbol | |
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| ID | 8134941 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4459768 |
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| End bp | 4462377 |
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| Gene Length | 2610 bp |
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| Protein Length | 869 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644867261 |
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| Product | PTS system transcriptional activator |
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| Protein accession | YP_003019505 |
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| Protein GI | 253690315 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTTGT CCGCGAAAGA TAAACTGTTC CAAAACATCA TCACGCACTA TGCCAGTAAT
ACCCATGGAT TCACGGCGCT GGATTGTGCC GGTTTTATTC AGGTCAGCCG TAGCGTTATC
AGCCATTACC TTAATCGCCT GTGCGATGAG GGCAAACTCC ATAAGCAGAA TACTCGCCCT
GTCCGTTTTT ATATTGATAC TCGTCCACAA ACTTCGCCAG ATGCAGTGAT ACCGCTCAAG
CATGATGATG TTTTTAGTGA ACTGATTGGT GCTACAGGAA GTTTGCAGCA AGCCATCTCT
TCTTGTCGTT CTGCGGTGAA TTATCCTGGT CGGGGGCTAC CGATATTGCT CTCTGGCGAG
AGTGGCGTCG GGAAAAGCCA CCTGGCAGCA ATGATTCATC TTTATGCACA GGATCGCGGT
ATTGTTGCCT TGGACAAGCC ATTGGTCGAG CTTAACTGTG CCGACTATGC CAACAATCCC
GAACTGCTTT CCGCGACGCT GTTTGGCTAT ATAAAAGGGG CATTTACTGG AGCCGATCGG
GATAAAAAAG GTGCCTTTGA TGATGCTGAC GGCAGTTTCC TGTTTCTTGA TGAAGTGCAT
CGCTTATCTG CGGAAAATCA GGAAAAACTC TTTTTATTTA TGGATAAAGG TTACTTCTAT
CGTTTGGGAG ATAACCGTAC TCGCCACTCG GCCGCGATCC GCTTTATTTT TGCCACGACG
GAAAATGTCG ATACGGTGTT GTTGAATACT TTTCGTCGGC GTATTCCCAT TCGTATTGCG
CTACCAAACT TTATTTCCCG TCCGCTGACC GAGCGGGTTG CTCAGGTAGA GTATTTTTTA
CGCCGTGAAG CGAGCGATCT GAACTGCGAT ATTCATATGG ATAGCCTGTT GATGCATCAA
CTGGTGGCGT CTCCCATTCG GGGAAATATT GGCGAATTGA AAAACCAAGT CAGAGTGATG
TGTGCCAGTG CATGGAGTGA AAACCAGCAT TCAGAATATA TTGCATTACA GCCCCTCCAG
CCCGGCCAAA TGAATGGCGA TACGCTGGTG TTCTCTGCGC GAAAACCTTC AGCTTCCCTC
GATATTTCAT CACTGTTGCC AAAAGCGATG CGGGATGACG TGATATTCAA AGAGTTTTGT
CACAGCGGCA ATACCCTACT GTTGAATCGA AAGCTCGAAC AACTGCTCAC CACGCTTAAC
TGCACCGTGC AGAAAGAGGA ACTCTACAGC GGCTATATCT GGCAAAACAC GATGCGGGCC
ATTAATGAGT TGGAAAATCA AACGGGTATT GAATGTAACG CAGACTATCG AAAAACGGTT
TGGCTTTGCC TGCATTACGC CATGAATAAT GCCAGTGAAG CGCAATACAT CAATGAACTG
ACGGCCATCA CCGATTACGT TTCTGCAAAA GCCAGGCTGC TGGCGCTTGA ATGCCTCTGT
TTGTTGAAAA AATATGTGAC AAACACCGAC TATCCTTTGC TGATGCCGCT GCTGAGCTGT
GCCATGAATA AATTATCCGG CGATGATGAT TTGATTCAGG GCGTGATTGT CTCCCACGGT
CGCTCCACGG CTTCCAGTAT TGCAGGGATT GCAAACCAAC TAACGGGCGG ATACTACTTT
AAAGCGTTTG ATATGCCCAA CTCGACCTCG ACACGCGAGA TCATTGATCT GTTGATTGCC
CATCTGGATA GCATCAAACA GCGTGCAGGG TTGATTATAT TGGTCGATAT GGGATCGCTG
AAAGAGATCT ATGAGGAAAT AAAACTGCAC CTTCACGGTG AGTTGTTAGT CATTAATAAT
GTCAGTACGG CGATGGCGCT GGACATTGCA TCTAAGATTC AGAGTCGATT GTCCATGGAA
GAGATTATCG ACGGCGTAAA AGGCGCCTAT GAGGTCGAAA CAAGGTATTA CGCGGGTATG
CTTCCCGGTA ATAAAATTAT CATTTCATGT ATATCTGGTG AGGGGATTTC CAGAAAGCTG
AGAGATATTG TATTACGCTA TCTGGCCTCT GACACAATAG ATATCGTTAC AATGGAATAT
GATGATTTAA AATACAAACT GTCACAGGCC GATCCGGCAT TAAATGGCAC ACGGCTCGTC
ATTACTACGA CTGCGCTTGA TGCAGGTTAT ATCCCCATTA TTAGTGTTGA GCAATTAATA
AAAGAGAAGT TTGACATCCT GCACAGGGAC TATTTTACCG ACCTGCTTAT CTCCGGTGGA
ATGGAACCTA TGATTGATGA AGTGGTTAAG CTATTTACGG TAGAAGGCGT TGCCGGACGT
CTTAATTTCC TTAATCCGGT GATTATTATT GATGAAGTGG AAGCCGTGAT TAAGCAGTAT
GAATTTTTCT ACAAAATTCA TTTTGAGAGC TATTTACGCA TTAATCTGTT TATGCACATT
GCGCTGATGA TTGAACGGGT CATGGTCAAT ACTGGCATGT GCCATCGTGA TGACTCCGCT
CTAACGGCTG AACAGCAGGC GTTTGTCGAT GTTCACGATA CGTTTTTTCA GGTACTGAAC
CGTAAATACC ATATTGTCGT TCCATTGACA GAAGTGCTGA TGATTTATGA AATCATGGAG
CCCTGGATTT CTTCAGACCC TACGCCGTAA
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| Protein sequence | MALSAKDKLF QNIITHYASN THGFTALDCA GFIQVSRSVI SHYLNRLCDE GKLHKQNTRP
VRFYIDTRPQ TSPDAVIPLK HDDVFSELIG ATGSLQQAIS SCRSAVNYPG RGLPILLSGE
SGVGKSHLAA MIHLYAQDRG IVALDKPLVE LNCADYANNP ELLSATLFGY IKGAFTGADR
DKKGAFDDAD GSFLFLDEVH RLSAENQEKL FLFMDKGYFY RLGDNRTRHS AAIRFIFATT
ENVDTVLLNT FRRRIPIRIA LPNFISRPLT ERVAQVEYFL RREASDLNCD IHMDSLLMHQ
LVASPIRGNI GELKNQVRVM CASAWSENQH SEYIALQPLQ PGQMNGDTLV FSARKPSASL
DISSLLPKAM RDDVIFKEFC HSGNTLLLNR KLEQLLTTLN CTVQKEELYS GYIWQNTMRA
INELENQTGI ECNADYRKTV WLCLHYAMNN ASEAQYINEL TAITDYVSAK ARLLALECLC
LLKKYVTNTD YPLLMPLLSC AMNKLSGDDD LIQGVIVSHG RSTASSIAGI ANQLTGGYYF
KAFDMPNSTS TREIIDLLIA HLDSIKQRAG LIILVDMGSL KEIYEEIKLH LHGELLVINN
VSTAMALDIA SKIQSRLSME EIIDGVKGAY EVETRYYAGM LPGNKIIISC ISGEGISRKL
RDIVLRYLAS DTIDIVTMEY DDLKYKLSQA DPALNGTRLV ITTTALDAGY IPIISVEQLI
KEKFDILHRD YFTDLLISGG MEPMIDEVVK LFTVEGVAGR LNFLNPVIII DEVEAVIKQY
EFFYKIHFES YLRINLFMHI ALMIERVMVN TGMCHRDDSA LTAEQQAFVD VHDTFFQVLN
RKYHIVVPLT EVLMIYEIME PWISSDPTP
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