| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3936 |
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| Symbol | |
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| ID | 8134923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 4437457 |
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| End bp | 4439433 |
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| Gene Length | 1977 bp |
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| Protein Length | 658 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644867243 |
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| Product | glycogen debranching enzyme |
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| Protein accession | YP_003019487 |
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| Protein GI | 253690297 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGAAT TGCAGACGGG CAAGCCGACG CCGCTGGGAG CCAGTTTTGA CGGACAGGGC
GTGAATTTCG CGCTGTTTTC AGCGGATGCT GAGCGGGTCG AGCTGTGCAT ATTTGATGAA
CGCCAGCAGG AGCAGCGGCT CGAACTGACC GCGCGCAGCG GCGATATCTG GCACGGCTAC
CTTCCTGCTG CGCAGCCCGG CTTACGTTAC GGTTTCCGGG TTGATGGGCC GTTCGAGCCG
TCACAAGGCT TGCGCTTCAA CCCACATAAG CTGCTGTTAG ATCCGTGCGC CCGTCAGCTT
GACGGCTGGG TGGTGGATGA CGATTGCCTG CAAGGCGGCA TTGACCAGCG GGATGAACGC
GATAGCGCTG ACATCATGGC GAAATGCGTA GTCACGGCAG AGGATTACGA TTGGCAGGAT
GACCAGCATC CGCACACGCT CTGGCATCAG ACGGTGATTT ATGAGGCACA CGTTCGTGGA
TTGACGCAAC TGCACCCTGA TATTCCTGAA GATATTCGCG GTAGCTATGC GGCGCTGGGC
CATCCGGTGA TGATTGACTA TCTGACGTCG CTGGGCGTGA CGGCGCTGGA ACTGCTTCCG
GTGCAGCAGC ATGCCGATGA GCCACGGCTT CAGCAACTGG GGCTGCGTAA TTACTGGGGC
TATAACGTAC TGCTGCCGTT CGCCGTGGAT AACAGTTTGG CTGCGGGTGA TGACGCGCTG
AATGAATTCC GAGATGCGGT GAAAGCGCTG CATCGTGCGG GGATCGAGGT CATTCTGGAT
GTGGTGTTTA ACCACAGCGC AGAACTGGAT GTTGAAGGCC CCACGCTGTG CCAGCGCGGC
ATCGATAACC GCAGTTATTA CTGGCTGGGT GAGAACGGCG AATACCATAA CTGGACCGGC
TGCGGCAATG TGTTGCGGCT GAACCATCCG GCGGTCATTG ATTGGGTGAT GGACTGTCTG
CGCTTCTGGC GCGAGGTCTG CCACGTTGAT GGCTTCCGTT TCGATCTGGC AACGGTGCTG
GGGCGTACCC CGGATTTTAC CGCCGCTGCG CCGCTATTGT CCGCCATGAA AAACGATAGC
CGCTTACAGG GCTGCAAGCT GATTGCCGAA CCGTGGGACA TCGGGCATGG CGGTTATCAG
TTAGGTCAGT TCCCGACGCC GTTCGCGGAG TGGAGTGACC GCTACCGTGA CGATATGCGC
CGTTTTTGGC TGCATGGCGA CATTTCCCTC GGCGCGTTCG CTCGCCGCTT TGCCGCCTCC
AGCGATATTT TCCAGCAGCA CGACCGCCTG CCTTTCGCCT CTATCAACAA ACTGACGGCC
CATGACGGCT TTACGCTGCG CGATCTGGTG AGTTTCAACC ACAAGCACAA CGACGCCAAC
GGCGAGGGTA ACCGCGACGG TACCGACAGT AACTTCAGCA ATAACCACGG TACGGAAGGG
CTGGAAGCGG ACGACGACAT CCTACAGCGT CGGCTGGCGA GCCAGAAGGC GCTGCTGACG
ACGCTGATTC TGTCGCAGGG CACGCCAATG CTGCTGGCGG GCGATGAGCT GGGGCACAGC
CAGCAGGGCA ACAACAATGC CTACTGTCAG GATAACGAAT TGACCTGGCT GCATTGGGAA
AACGCAAATA GTGCACTGCG CGAGTTTGTC GCCGGATTGA TCCAACTGCG CCGCACGATC
CCGGCATTAC AGCAGGAGAC GTGGTGGCAA GAAGGGGACG GTGCAGTGCA ATGGCTCAAC
AGAGAAGGCC AGCCGTTGAC GCCGCAGCAG TGGGAACAAG GGGAGCATCA GCTACAGATT
TTACTGTCTG GTCGTTGGCT TGTGCTGTTT AACGCCAGCC TACACGCCGG TGAGTTCATG
TTGCCAGAAG GCCACTGGCA GGTTTCACCG CCGTTTGATG AGACGAACCC GCCCGAGGGC
GGAATCTGGC ACGGACAAGC GCAGGCGGTA TGTGTCTTGA TAAAACAGAC CGCCTAA
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| Protein sequence | MAELQTGKPT PLGASFDGQG VNFALFSADA ERVELCIFDE RQQEQRLELT ARSGDIWHGY
LPAAQPGLRY GFRVDGPFEP SQGLRFNPHK LLLDPCARQL DGWVVDDDCL QGGIDQRDER
DSADIMAKCV VTAEDYDWQD DQHPHTLWHQ TVIYEAHVRG LTQLHPDIPE DIRGSYAALG
HPVMIDYLTS LGVTALELLP VQQHADEPRL QQLGLRNYWG YNVLLPFAVD NSLAAGDDAL
NEFRDAVKAL HRAGIEVILD VVFNHSAELD VEGPTLCQRG IDNRSYYWLG ENGEYHNWTG
CGNVLRLNHP AVIDWVMDCL RFWREVCHVD GFRFDLATVL GRTPDFTAAA PLLSAMKNDS
RLQGCKLIAE PWDIGHGGYQ LGQFPTPFAE WSDRYRDDMR RFWLHGDISL GAFARRFAAS
SDIFQQHDRL PFASINKLTA HDGFTLRDLV SFNHKHNDAN GEGNRDGTDS NFSNNHGTEG
LEADDDILQR RLASQKALLT TLILSQGTPM LLAGDELGHS QQGNNNAYCQ DNELTWLHWE
NANSALREFV AGLIQLRRTI PALQQETWWQ EGDGAVQWLN REGQPLTPQQ WEQGEHQLQI
LLSGRWLVLF NASLHAGEFM LPEGHWQVSP PFDETNPPEG GIWHGQAQAV CVLIKQTA
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