Gene PC1_3462 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3462 
Symbol 
ID8134442 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp3904831 
End bp3906054 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content58% 
IMG OID644866763 
Productlysophospholipid transporter LplT 
Protein accessionYP_003019014 
Protein GI253689824 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTCAAC AGACTGAACC CGCGACACCT TTGCTGTCGC GCAGTATGAA CGCGGTAATT 
ATCGCGCAGT TCTTCTCCGC GTTTGGCGAT AATGCGCTGT TGTTTGCCAC GTTAGCGCTG 
ATTAAACAGC TGGTGTATCC CGACTGGAGC CAGCCGTTTT TGCAGATGGG GTTTGTCGCC 
GCCTACATCA TTCTGGCACC GTTTGTTGGA CAAATTGCGG ATAGTTTCTC CAAAGGGCAG 
GTGATGATGT TCGCCAATAC CCTGAAGCTG GCGGGCGCGC TGCTGATTTG CGTCGGCGGG 
AATCCGTTTC TGGGGTACAC GCTGGTAGGG GTTGGCGCTG CGGCTTATTC TCCGGCGAAA 
TACGGTATTT TGGGTGAGAT CACGCGTGGT GACCAGTTGG TCAAAGCGAA TGGGCTGATG 
GAAGCCTCGA CCATTGCGGC GATCCTGACC GGTTCCGTCG CGGGTGGTGT TCTGGCCGAC 
TGGAACATTT ACGGGGCGCT GTCGATTTGT GCGGTGGCTT ACGGCATAGC GCTGGGGGCG 
AATATGTTGA TTCCTCGCCT CAACGCAGCA CGGCCGGGAC AGCCGTGGCA TCCGGTGCAG 
ATGGCGAGCA GCTTCTTTTC CGCCTGTCGG GTGCTGTGGC GCGATGGTGA CGCCCGGCTT 
TCGCTGGTTG GCACCAGCAT GTTCTGGGGC GCAGGCGTGA CGCTGCGCTT CCTGCTGGTG 
CTGTGGGTGC CGCATGCGCT TGGGATTACG GACAATGCGA CGCCGACGCT GCTTAACGCG 
ATGGTCGCCG TGGGCATCGT GGTGGGAGCC GGTGCGGCTG CGAAACTGGT GACGCTCGAC 
AGCGTGCGGC GCTGCCTGCC TGCCGGGTTC CTGATTGGCG TAGTGGTGGT GATTTTTACA 
CTTCAGCATA ACCTCATGAG TGCCTATTCC CTGTTGATTC TGCTGGGGGC GCTCGGTGGT 
TTTTTCATTG TCCCGCTGAA TGCGCTGTTG CAGGAGCGTG GGAAGGCCAG CGTCGGTGCG 
GGTAATGCGA TCGCCGTACA GAATTTGGGT GAGAACGGCG CTATGCTGTT AATGCTTGGG 
CTCTATTCTC TGGTGGTGAA ACTGGGCGTT TCAGTTATCG CTATCGGAAT CGGCTTTGGC 
GTCTTGTTTG CGCTGGCGAT TGCGCTGCTG TGGGTATGGC TGATTCTGGC TAAGCGCCGT 
GATCGTTCTG CCAGTGCGGA ATAA
 
Protein sequence
MSQQTEPATP LLSRSMNAVI IAQFFSAFGD NALLFATLAL IKQLVYPDWS QPFLQMGFVA 
AYIILAPFVG QIADSFSKGQ VMMFANTLKL AGALLICVGG NPFLGYTLVG VGAAAYSPAK 
YGILGEITRG DQLVKANGLM EASTIAAILT GSVAGGVLAD WNIYGALSIC AVAYGIALGA 
NMLIPRLNAA RPGQPWHPVQ MASSFFSACR VLWRDGDARL SLVGTSMFWG AGVTLRFLLV 
LWVPHALGIT DNATPTLLNA MVAVGIVVGA GAAAKLVTLD SVRRCLPAGF LIGVVVVIFT 
LQHNLMSAYS LLILLGALGG FFIVPLNALL QERGKASVGA GNAIAVQNLG ENGAMLLMLG 
LYSLVVKLGV SVIAIGIGFG VLFALAIALL WVWLILAKRR DRSASAE