| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3449 |
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| Symbol | |
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| ID | 8134429 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3896272 |
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| End bp | 3897288 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644866750 |
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| Product | twitching motility protein |
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| Protein accession | YP_003019001 |
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| Protein GI | 253689811 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0548659 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGTTGG ATAAGTGGAT AGCGCGTAGT GTAAAACATA ATGCCTCAGA TCTGCACCTT
TGTAGCGGCC ATCCGCCCGT GTTACGTGTC GATGGGCGGC TACAGCCTGA AAATACCTTA
CCACGTTTAA CGTCGGAGCA GGTGGCACGA TGGTGTGATG CCTGGCTTGA ACCCGCTCAG
AGAGAACAAC TGCGGCAGTT TGGTCAGATA GACGGCGCGT TAATGCTGCC TGATGGGCAG
CGTCTGCGGG TAAATGTGTT TCGCCAGCGA GAAGGGCTGT CCGCGGCGCT GCGTATTATC
CCGTCCGTTC AGCCGTCATT GGACGGGCTA CACGCGCCAC CCGTTCTGTC GACGCTGTTG
GAGAAACCGA ACGGGCTGAT CCTGATTACC GGTGCGACGG GGAGCGGTAA ATCCACGACG
CTGGCGGCAA TGCTCGGGGC GTTAAACGAC AGCAGCGATC GCCATGTGAT TACGCTGGAG
GATCCGATCG AGTTTATCCA TGCCAGCCGA CGCTGCCTGA TTCAACAGCG AGAGATCGGT
GCGCACAGCG CGTCTTTTGC ACAGGCGCTA CGGGCCACCT TGCGGGAAGA TCCCGATGTG
ATTTTGCTGG GAGAATTGCG CGATACGGAG ACGATTCGGC TGGCGCTGAC GGCGGCGGAA
ACCGGTCATC TGGTGCTATC CACGCTGCAT ACGCGCAGTG CATCGCAGGC GGTCGATCGT
CTGATTGACG TCTTTCCCGG TGAAGAGAAA GCCTATGTTC GCAGTCAGCT ATCCACCTGC
TTGCAGGCCG TGGTGACGCA AAGGTTGTTG CCTTCTGCAC ACGGCGGTCG TATTGCGCTT
TATGAAGTGC TGACGGCGAC AGCGGCAGTC AGCAACCTGA TTCGGGAAGG GAAAACGCAT
CAGCTTCCCG GCCTGATTCA AACGGGAACG GCTGCGGGCA TGCAAACGTT CGAGCAAAGC
TACCAGCAGC GATGTCGGGA TGGGCTTATT TCACACAATT GCGCCCTTGC CGTTTAG
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| Protein sequence | MELDKWIARS VKHNASDLHL CSGHPPVLRV DGRLQPENTL PRLTSEQVAR WCDAWLEPAQ
REQLRQFGQI DGALMLPDGQ RLRVNVFRQR EGLSAALRII PSVQPSLDGL HAPPVLSTLL
EKPNGLILIT GATGSGKSTT LAAMLGALND SSDRHVITLE DPIEFIHASR RCLIQQREIG
AHSASFAQAL RATLREDPDV ILLGELRDTE TIRLALTAAE TGHLVLSTLH TRSASQAVDR
LIDVFPGEEK AYVRSQLSTC LQAVVTQRLL PSAHGGRIAL YEVLTATAAV SNLIREGKTH
QLPGLIQTGT AAGMQTFEQS YQQRCRDGLI SHNCALAV
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