| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3349 |
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| Symbol | nlpD |
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| ID | 8134329 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3777469 |
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| End bp | 3778503 |
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| Gene Length | 1035 bp |
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| Protein Length | 344 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644866650 |
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| Product | lipoprotein NlpD |
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| Protein accession | YP_003018901 |
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| Protein GI | 253689711 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0164165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGAAGCC GAATGATGAA TTTGCGTCAC ATTGCTGCTT GTACGGTGAT TGTCTTAGGA
TTGGCTGGAT GTACCAACAA TAATTCCAAA TCCGCACCGA TCAGCAGCGT TGACGGAAAT
ACGGGCAGCC GAGGGGGAAT GTTATCTGCG CCACCATCAC GTATTTCAAC GACGAGTGAA
AGTGTTGCAA CAACGTCCGA TGGCCGGATT GTTTATAACC GCAGCTACGG TAATATTCCG
AAAGGCAGCT ACAGCGGCGG CAATTCCTAC ACCGTTAAAC GTGGCGATAC CCTGTTTTAT
ATCGCCTGGA TTACCGGCAA TGATTACCGA GATCTAGCGC AGCGCAACAA TATTCCTGAG
CCATACAGCC TGAATGTGGG GCAATCGCTG AATTTAGGCA ACGGCTCCGG CAACAACGCT
TCCGGTGGCG GCCTGACGAG CGGTGGTGGT ATGTTGGCAA CAACCGATGC CACCCGAGGT
GGCGTACCGA CGCCGCCATC AAGTACTCAA ATACAAACTA CATCGGTTGA TTCTCAGTCA
ACTAATGCGT ATTCTGGTAA CCAGGGTAAA CAGAATGTAG GTAAGATGTT ACCTACGGCA
GGGGCAACAA CAACCGCTCC TGTTTCCGCA CCAGCGGCTG TTGCCAGCAG CAATACGGCT
GCTGTCGGCA GTTGGCGTTG GCCTACCGAT GGGAAAGTCA TAGATAGTTT CTCTGCTTCT
GAAGGGGGAA ATAAAGGGAT TGATATCGCC GGCTCACGTG GGCAACCGAT CACCGCAACC
GCCAGTGGGC GAGTGGTGTA CGCGGGCAAT GCGCTACGTG GTTACGGAAA TCTGATAATC
ATCAAACATA ATGATGACTA CCTCAGTGCC TATGCCCATA ACGATACGAT GCTAGTCCGT
GAGCAACAAG ATGTCACGGC AGGACAAAAA ATCGCTACGA TGGGCAGTAC GGGCACCAGC
TCAGTTCGCT TGCACTTTGA AATTCGTTAC AAGGGGAAAT CCGTAAACCC GCTGCGTTTT
CTGCCGCAGC GATAA
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| Protein sequence | MGSRMMNLRH IAACTVIVLG LAGCTNNNSK SAPISSVDGN TGSRGGMLSA PPSRISTTSE
SVATTSDGRI VYNRSYGNIP KGSYSGGNSY TVKRGDTLFY IAWITGNDYR DLAQRNNIPE
PYSLNVGQSL NLGNGSGNNA SGGGLTSGGG MLATTDATRG GVPTPPSSTQ IQTTSVDSQS
TNAYSGNQGK QNVGKMLPTA GATTTAPVSA PAAVASSNTA AVGSWRWPTD GKVIDSFSAS
EGGNKGIDIA GSRGQPITAT ASGRVVYAGN ALRGYGNLII IKHNDDYLSA YAHNDTMLVR
EQQDVTAGQK IATMGSTGTS SVRLHFEIRY KGKSVNPLRF LPQR
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