| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3324 |
|---|
| Symbol | |
|---|
| ID | 8134297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3744862 |
|---|
| End bp | 3745443 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644866618 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003018876 |
|---|
| Protein GI | 253689686 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5516] Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCACACAT CACCGATAAC TCAGCCTCAC TTTCTCGCGA ACAATCTCGC GTTGGACCTC
ATCAACAGTG CATTTGGAAC AGGAGACGAA TACCACGACT GTTTGACAGA TGACGCCAGT
GTCATCGCCT GGCTTAAAGC GGCTAAGCAA CTGCCTGAAA ATTTTACAGA CACACCGACA
GGCCTGATTC ATGACGCTCT GGCACTGCGT CAGGCAATGA TTCAGACAAT AGAAGCCGTC
CGATCGGGTA AGGAATATAA CCCTGAACGA ATAAACCAAA TTCTTGATAG TGGACGGCCG
GTGAGAATGC TGGAATGGAA TAGTCAGCAG GCTGGTTTCA GCGTAGTGGA ATGCAGAAGA
GATAACAGTT GTGCCAGCTT ACTTGAACCG GTAGCAATGG CATTCGCTGC ACTGGTTTCC
GGGCCTGAGG TAAAATATAT TCGCCAGTGT GAGGCACACG ACTGTACTCT ATTCTTTCTG
GATACCACCA AATCACATCG TCGGCGATGG TGCAGCATGG CGCTCTGTGG CAACAGGATG
AAAGTCGCGG CGTTCCGCTC ACGTAAGCAG GAAGCAGACT GA
|
|---|
| Protein sequence | MHTSPITQPH FLANNLALDL INSAFGTGDE YHDCLTDDAS VIAWLKAAKQ LPENFTDTPT
GLIHDALALR QAMIQTIEAV RSGKEYNPER INQILDSGRP VRMLEWNSQQ AGFSVVECRR
DNSCASLLEP VAMAFAALVS GPEVKYIRQC EAHDCTLFFL DTTKSHRRRW CSMALCGNRM
KVAAFRSRKQ EAD
|
|---|
| |