| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3198 |
|---|
| Symbol | |
|---|
| ID | 8134165 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3607103 |
|---|
| End bp | 3608251 |
|---|
| Gene Length | 1149 bp |
|---|
| Protein Length | 382 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644866493 |
|---|
| Product | late control D family protein |
|---|
| Protein accession | YP_003018757 |
|---|
| Protein GI | 253689567 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3500] Phage protein D |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000789216 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATTAACC CGCTGAATGT TCGTGCGGGC AGTAAAACTG CCCCGGCGTA CCTGCTGCGC
CTGAATGAGC AGGACATCAC GACCGTTATC ACCCCGCGCC TGCTATCACT GAGCCTGACA
GATAACCGGG GCTTTGAGGC CGACCAGCTC GACATCGAGC TGGACGACAG CGACGGGCTG
TTACAGTTAC CCCGCCGGGG CGCGGTGCTG TCGGTGTTTT TGGGCTGGGA AGGTGAAGCG
CTGATCGGCA AAGGCGATTT TACGGTGGAT GAAATAGAAC ACCGTGGCAC GCCGGATACG
CTGACCATCC GGGCGCGGAG TGCCGATTTT CGTGGGTCGC TGAACTCCCG GCGTGAGCTG
TCCTATCACG ACACCACGCT GGGGGCAATT GTTGAACAGG TGGCAAAACG TAACAACCTT
GCGCCGATGC TGGCTGATGG TTTTGCCGGG ATAAAAATTC CGCACATCGA CCAGACGCAG
GAAACCGACG CGGTATTTAT TACCCGGCTG GCCGAGCGCA ACGGGGCGAT TGTGGCAATC
AAAGCCGGAC GTTTACTGTT TATCCGCCCC GGAACGGGGA AGACGGCCAG CGGCAAGCCC
ATCCCGCAGC AGATGATTGA ACGCAGCGAC GGCGATCAGC ACAGTTTTAG CCTGGCTGAT
CGGGGCGCGT ACACAGGCGT AACGGCAAGC TGGCTGCATA CTAAAGAGCC GCAGCCAAAG
AAGCCTAAAA AGGTCAAAGT GCAGCGCAAA GTCTTGCTGC ATCAGGGCCC ACAGAAAACC
CACCCGAAAG CGAAGAAAGC AACCAAAGCG CCGGAAGCAC GCGAGGGGGA TTATCTGGTT
GGCACAGATG AGAACGTACT GGCGCTGACC ACGGTTTTTG CGACCAAAGC ACAGGCCATG
CGTGCCGCAC AGGCAAAGTG GAACAAACTC CAGCGTGGTG TCGCGGAGTT CTCTATCACG
CTGGCAATGG GGCGCGCCGA CCTGTTCCCG GAAACGCCCG TTCAGGTCAG CGGATTCAAA
CAGGTGATCG ACGAACAGGA ATGGACAATC TCAAAAGTGA CGCACAGTTT GAGTAATTCA
GGCTACGTTA CCGCGCTGGA GCTGGAAGTG CTGTTGTCTG ATGTGGAATA TGAGGGAAGT
GTTCAGTAA
|
|---|
| Protein sequence | MINPLNVRAG SKTAPAYLLR LNEQDITTVI TPRLLSLSLT DNRGFEADQL DIELDDSDGL
LQLPRRGAVL SVFLGWEGEA LIGKGDFTVD EIEHRGTPDT LTIRARSADF RGSLNSRREL
SYHDTTLGAI VEQVAKRNNL APMLADGFAG IKIPHIDQTQ ETDAVFITRL AERNGAIVAI
KAGRLLFIRP GTGKTASGKP IPQQMIERSD GDQHSFSLAD RGAYTGVTAS WLHTKEPQPK
KPKKVKVQRK VLLHQGPQKT HPKAKKATKA PEAREGDYLV GTDENVLALT TVFATKAQAM
RAAQAKWNKL QRGVAEFSIT LAMGRADLFP ETPVQVSGFK QVIDEQEWTI SKVTHSLSNS
GYVTALELEV LLSDVEYEGS VQ
|
|---|
| |