Gene PC1_3112 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3112 
Symbol 
ID8134073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp3527648 
End bp3528178 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content56% 
IMG OID644866401 
Product2'-5' RNA ligase 
Protein accessionYP_003018671 
Protein GI253689481 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.128685 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGCCC CTCGCCGCCT GTTTTTTGCC CTATCACTAC CGGAAACCAC ACAGCAAGAG 
ATTATCCGCT GGCGTGCCGA GCACTTCCCT CTGGAAGCGG GTCGTCCGGT TGCGGCGGCC 
AATCTTCATC TGACGCTGGC TTTTTTGGGT GACGTGAGTG AACAAAAAGC ACAGGTCTTA 
CAAACATTGG CAGGCCGCAT CCGTCAGCCC GCCTTTTCCC TTACGCTGAA CGACGCCGGA 
CACTGGCCGC GCCCCGGCGT TGTCTGGTTG GGCTGCCGCC GCGCGCCGCG TGGCCTGCTA 
CAGCTCGCGG AACTGTTGCG TTCTCAAGCT GCACGCAACG GCTGTTATCA AACAGCACTA 
CCTTTTCATC CACACATTAC GCTATTGCGC GGCGCGACTC GTCCTGTTGC GATTCCCCCC 
GCAACCTTCA GTTGGCAGGT CGATATGACG CAATTCTCGC TTTACGAGTC ACTCTTCGAC 
AATGGTAAAA CCCGCTATCA GCAGTTGGAA AGCTGGTCAT TTATTAAATA A
 
Protein sequence
MSAPRRLFFA LSLPETTQQE IIRWRAEHFP LEAGRPVAAA NLHLTLAFLG DVSEQKAQVL 
QTLAGRIRQP AFSLTLNDAG HWPRPGVVWL GCRRAPRGLL QLAELLRSQA ARNGCYQTAL 
PFHPHITLLR GATRPVAIPP ATFSWQVDMT QFSLYESLFD NGKTRYQQLE SWSFIK