| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3105 |
|---|
| Symbol | |
|---|
| ID | 8134066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3515896 |
|---|
| End bp | 3517356 |
|---|
| Gene Length | 1461 bp |
|---|
| Protein Length | 486 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644866394 |
|---|
| Product | transcriptional regulator, GntR family with aminotransferase domain |
|---|
| Protein accession | YP_003018664 |
|---|
| Protein GI | 253689474 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTCCATCA TCGACTCACA AGAAAGTACG CTCTATCAAC AGCTCGCGGA AATCTTCGCC
ACGGCGATTC ATCAAGGGAC GTTAGCGCCG GGAAGCCGCT TGCCTTCTAT TCGTCGCGTC
GCCGGATCGC ATCAGGTGAG TGTCAACACG GTGTTGAATG CCTGGCGTAT TCTCGAAGAT
CGCGGGTTGA TCGAAGCGCG GCCGCAGTCG GGCTATTTTG TTCGAGGTCG TCTACCGTCG
CTGACGGAAA GTAAGCCGCA TCGTGCGCAG GTGATTGTGC CGGGCAGTGA GAAACTGGAT
CTGATTGATA CCGTGTTTGC TGCCCAGACA CACCCGGATT ACACCAACAT ATCTCTGGCG
TGCCCACAGC ATGCCGATTT CTATCCGACC GAAAAGATTA GCCGTATTAC CGCTTCCCTA
TTGCGGCGAC AGCCCGACCT GATTGGCCGT TATGCGCTAC CGCCGGGCAG TGAGCGACTG
CGGCGCGAAG TGGCGCGGCG TGCGATGGAT TTGGGCATGA CCTTGACTCG TGAAGACATC
ACGATCACCC ACGGCTGTAT GGAGGCGCTA CAGCTGGCAC TGCGCACGGT GACGCAGCCG
GGCGATTGTG TCGGGCTGGA AACGCCAACC TATTTTTATC TCTTTCCTCT GCTGGCCAGT
CTGGGATTGA AAACGGTGGA GATTCCCACC GATCCACAAC GCGGCCTCGC GCTGGATGCG
CTGGAACTGC TGCTGTCAGA AGGGAGGCTA CAGGCGATTA TCGCGATGCC GAACGCACAG
AATCCGCTAG GGTGCAGTAT GACGCTAGAG GATAAAAAGC GGCTGGCAAA GCTGGTGAAT
GACTATCAGG TGCCGCTTAT TGAGGATGGG TTATACAGTG AACTTCAGTT TACCTGGCCG
CTGTCGCCGA CGGTGAAAGC CTTCGACCGC GAAGGCTGGG TGATTTACTG TTCCAGCTTC
ACGAAAACGC TGGCACCGGA TTTTCGCATT GGCTGGATGG CGTCGGGCCG TTTCCGTGCC
AAAGTTGCAC GGCTGAAAGC GGTCTCGTCA ATGGCGGAAT CGGCGCTGCT ATCGGAAACA
CTGGCGCAGT TTCTGGAGTC CGGCGGTTAC GATCACCATC TGCGTACGCT GCGCCGTCGC
TATGCCGCAC AGATGGATGA GGCTCGTGGG CTCATCGCAC GACATTTTCC ACAGGGGACG
CGGGCGACGC AGCCGCAGGG CGGTTTTGTC TTCTGGCTGG AGTTACCGGG CGGGGTGGAT
GGTGTTGAAT TGTTCCATCG TCTGCTGCAA GAGCAGATTT GCGTCACGCC CGGCGAGCTT
TACACGCTGA GCGGCCGCTG TAAGCACGGG CTTCGGCTAT CGTGCTGCTA CCCGTTTGAT
GAACGCTATA CGTATGCACT TAAGCGCGCG GGGGCGCTGG CGTGTGAGAT GAGCGGTATC
GGGCCGGGTA GCGCAACGTA G
|
|---|
| Protein sequence | MSIIDSQEST LYQQLAEIFA TAIHQGTLAP GSRLPSIRRV AGSHQVSVNT VLNAWRILED
RGLIEARPQS GYFVRGRLPS LTESKPHRAQ VIVPGSEKLD LIDTVFAAQT HPDYTNISLA
CPQHADFYPT EKISRITASL LRRQPDLIGR YALPPGSERL RREVARRAMD LGMTLTREDI
TITHGCMEAL QLALRTVTQP GDCVGLETPT YFYLFPLLAS LGLKTVEIPT DPQRGLALDA
LELLLSEGRL QAIIAMPNAQ NPLGCSMTLE DKKRLAKLVN DYQVPLIEDG LYSELQFTWP
LSPTVKAFDR EGWVIYCSSF TKTLAPDFRI GWMASGRFRA KVARLKAVSS MAESALLSET
LAQFLESGGY DHHLRTLRRR YAAQMDEARG LIARHFPQGT RATQPQGGFV FWLELPGGVD
GVELFHRLLQ EQICVTPGEL YTLSGRCKHG LRLSCCYPFD ERYTYALKRA GALACEMSGI
GPGSAT
|
|---|
| |