Gene PC1_3088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3088 
Symbol 
ID8134049 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp3496279 
End bp3497505 
Gene Length1227 bp 
Protein Length408 aa 
Translation table11 
GC content56% 
IMG OID644866377 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_003018647 
Protein GI253689457 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.120291 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATGACAC GAGCGTATGA ATTCACACCG GTCAGTCGAT TGGGGCTGAC AGCGATCGTG 
ACCCTCTATT TAGCGCATGC CCTGCCGCTC TATTTCTACA ATGTTGCGAT GCCGAGCATT 
CTGCGTAGTC AGGGGGTGGA TTTGCGCTGG ATAGGCATGC TTTCGCTGCT TTATCTGCCC 
TGGGCCTGTA AATTTCTCTG GGCACCGTTA ATTGATCGTT ATTATCTGCC TGCCCTGGGG 
CGTCGTCGCA CCTGGTTATG GTTGACGCAA ATTGCACTGG CAACCGGTGT ACTGGTTCTG 
GCATTCACCG GACTGGATTA CGGATTGTTC CCGTTCGTAC TGATTGGACT CTGGATCTCG 
ACCTGGGCTG CCACGCAGGA TATCGCTATC GACGGCTATA CGGTGGAATC ACTGGCAGCG 
TCAGATCATC GTCTTGGCAG CATGGCGCAA AGTATCGGCG TGGCGCTGGG CAGCATGATC 
GGCGGCGCTG GCATCCTGTT ACTGTATCAG CTGTATGGCT GGCGCAGCGC ATTGCTGTCT 
CTGGCGGTCT TGACGGCGCT GACTATGATG GCTGTCACCT GGATTAATGA ACGCCCCCAG 
ACCTCCCCAA CGTCTGAGCG CCCGAGCTTC GCCAATACGT TCAGGCGTCG TGAGATACGT 
TGGGCTTTGC TGCTTATTCT GCTCTATCGA CTGGTTGAAG CCCCCGCCAT GGCCATGCTT 
ACTCCGCTGC TGGTCGATCA GCGATGGACA CTGGTGGAAA TCGGCCTTCT GATGTCGGTA 
GCTGGGGCGG GGATCGGATT ACTGAGCGCC ATCACCACAG CGTGGGCACT CAAACGCTAT 
TCGTCCGACG TACTGCTGGT TCGTGCTGGC TGGCTGCGCA GTGGCGTTTA TCTGCTGCTC 
GCCGCGCTGA TCTACAGCGG TTCAACCATG ACTTCAGGAT GTTGGCTCGG CACATTAGTC 
ATCGTCATGT TGGCGATTCG CTACATGGCA ATGACCAGCC TTTATGCACT GTTCATGCGT 
CTGTGCTCAC GCCAACAGGC TGGTACCGAC TTCACTGTGC TGGTGTGCTT TGAACTCCTG 
GTGTTTTTCC TTGGCGGTTC GCTCTCCGGC TTTCTCGCCG CAGGGCTGGG CTATGGCGCT 
TATTATCTGC TGCTCGGCGT TCTGTCGCTA CTGAGCGTCT TACTGTGTCG GCCGCTCATC 
AGAAAACATC TGACCAAAAC TATTTAA
 
Protein sequence
MMTRAYEFTP VSRLGLTAIV TLYLAHALPL YFYNVAMPSI LRSQGVDLRW IGMLSLLYLP 
WACKFLWAPL IDRYYLPALG RRRTWLWLTQ IALATGVLVL AFTGLDYGLF PFVLIGLWIS 
TWAATQDIAI DGYTVESLAA SDHRLGSMAQ SIGVALGSMI GGAGILLLYQ LYGWRSALLS 
LAVLTALTMM AVTWINERPQ TSPTSERPSF ANTFRRREIR WALLLILLYR LVEAPAMAML 
TPLLVDQRWT LVEIGLLMSV AGAGIGLLSA ITTAWALKRY SSDVLLVRAG WLRSGVYLLL 
AALIYSGSTM TSGCWLGTLV IVMLAIRYMA MTSLYALFMR LCSRQQAGTD FTVLVCFELL 
VFFLGGSLSG FLAAGLGYGA YYLLLGVLSL LSVLLCRPLI RKHLTKTI