| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_3036 |
|---|
| Symbol | |
|---|
| ID | 8133991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3420546 |
|---|
| End bp | 3421628 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644866319 |
|---|
| Product | transport system permease protein |
|---|
| Protein accession | YP_003018595 |
|---|
| Protein GI | 253689405 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0609] ABC-type Fe3+-siderophore transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTACGA CCACTGAACC GGGTATCCGC AATACTACCG CGGATGCCAA CACCGTTATG
GACAACTATC GCGGCATCAT TCGACGCCGC GTGGGTGTGA TGGCGATACT GCTGTTGATC
ATCATCGGCT CGTTGTTGCT GGATTTCACG ATGGGACCTT CAGGCCTGAC GCTTGATGTG
CTGTGGCAAA CGCTGACCGA TCCGGCCAGC GCCGATGCTG GTACACGCGT GATCGTTTGG
GACATTCGTC TGCCTTACGC GCTGATGGCG ATTATTGTCG GGCTGGCTCT CGGCCTGGCT
GGCGCAGAAA TGCAAACCAT CCTGAATAAC CCGTTGGCCA GTCCGTTTAC GCTCGGCGTT
TCTTCCGCCG CCGCATTCGG CGCCGCGCTG GCTATCGTCC TCGGCATCGG TATCCCCGGT
ATTCCGGCTC AGTGGTTTAT CTCTGCAAAC GCTTTTATCT TTGCCCTGCT GGCAGCCTTG
CTGCTTGATG GGATTACGCG CTGGACGCAG GTCGCCACGT CCGGCGTCGT GCTATTCGGT
ATCGCGCTGG TGTTCACTTT CAATGCGCTG GTTTCCATGC TCCAGTTCAT CGCCAACGAA
GACACGCTGC AAGGTCTGGT GTTCTGGACG ATGGGCAGCC TGGCGCGCGC GTCGTGGGAA
AAACTGGGCA TCCTGCTGCT GGTTCTGGCC ATCATCATGC CCATTTCGCT GATGAGTTCA
TGGAAACTGA CCGCGCTGCG GTTGGGTGAA GATCGCGCCG TGAGTTTTGG CATTAACGTT
CGCCGCCTGC GTCTGGCGAC GCTGCTGCGC ATCAGTATTT TATCTGCCAT TTCAGTCGCA
TTTGTTGGCC CCATCGGCTT TATCGGTCTG GTTGCTCCGC ATATCGCACG TATGGTTTTC
GGTGAAGATC ACCGCTTCTA TCTGCCTGCC AGTGCCTTAA CCGGTGCACT GGTGCTGTCG
ATGGCATCTG TTGCCTCGAA AAATCTCATC CCCGGCGTCA TTATCCCGGT CGGTATCGTC
ACATCACTGG TTGGCGTGCC CTTCTTCCTG AGTATTATCC TGCGCCACAG AGGAAACGTA
TGA
|
|---|
| Protein sequence | MSTTTEPGIR NTTADANTVM DNYRGIIRRR VGVMAILLLI IIGSLLLDFT MGPSGLTLDV
LWQTLTDPAS ADAGTRVIVW DIRLPYALMA IIVGLALGLA GAEMQTILNN PLASPFTLGV
SSAAAFGAAL AIVLGIGIPG IPAQWFISAN AFIFALLAAL LLDGITRWTQ VATSGVVLFG
IALVFTFNAL VSMLQFIANE DTLQGLVFWT MGSLARASWE KLGILLLVLA IIMPISLMSS
WKLTALRLGE DRAVSFGINV RRLRLATLLR ISILSAISVA FVGPIGFIGL VAPHIARMVF
GEDHRFYLPA SALTGALVLS MASVASKNLI PGVIIPVGIV TSLVGVPFFL SIILRHRGNV
|
|---|
| |