| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2994 |
|---|
| Symbol | |
|---|
| ID | 8133949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3379749 |
|---|
| End bp | 3380522 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644866277 |
|---|
| Product | putative secreted protein |
|---|
| Protein accession | YP_003018553 |
|---|
| Protein GI | 253689363 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCATT ATCGTTTTAA ATGGCTCGGC CATCTGGCCA TCGCATTAGG TCTGGTGCTG
TCTGCCAGCA TTCATAATGT TGCGGAGGCG GCAAAAATTA ACAATATCGT TTTAGTCCAC
GGTGCCTTTG CCGACGGTTC GAGCTGGTCT GCCGTTACGT CTCGTCTGCA AGCGCTGGGT
TACCACGTGA CGGCGGTGCA AAACCCGCTG ACCTCTTTAG CGGATGACGT TGAGGCGACG
GAACACGTGC TGCAAAGGCA GCAGGGTGAT GTGCTGCTGG TAGGGCATTC GTGGGGCGGA
GCCGTCGTGA CGCAGGCCGG TAATGATCCC AGGGTTCGCG GCATCGTCTA TTTGTCGGCG
CTGGTGCCAG ATAGTGGAGA ATCCGTCTCT GATTTATTGC AGCGCCTGAA AGCGCCGATG
GAAGGCATGT CCCCTGATGC CAATGGGCTA ATTTGGTTGG ATAACCCCGA ACAGTATCGT
GAGGTGATGG CGGGCGATGT GCCACTGAAG AAAGCGCAGG AGTTGGCTGC GGTGCAGCAG
CCGATGGCGG CAAAGGCGTT TGGCGATCGT GTTCAGCAGG CAGCGTGGAA AGCTAAACCG
ACCTGGTATT TGTTGACGGA GAAGGACAAG GCATTAAATC CATCGATTCA GAAAGACATC
GCGAGCCATA TCGGCGCAAA GACACGCGCT ATTGCCTCCA GCCATATGTC TCTGGTGTCA
CACCCGGAAG CTGTCGCGGA TTTTATTGAT AGCGCGGCTA AAGCAGTTAA ATGA
|
|---|
| Protein sequence | MTHYRFKWLG HLAIALGLVL SASIHNVAEA AKINNIVLVH GAFADGSSWS AVTSRLQALG
YHVTAVQNPL TSLADDVEAT EHVLQRQQGD VLLVGHSWGG AVVTQAGNDP RVRGIVYLSA
LVPDSGESVS DLLQRLKAPM EGMSPDANGL IWLDNPEQYR EVMAGDVPLK KAQELAAVQQ
PMAAKAFGDR VQQAAWKAKP TWYLLTEKDK ALNPSIQKDI ASHIGAKTRA IASSHMSLVS
HPEAVADFID SAAKAVK
|
|---|
| |