| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2955 |
|---|
| Symbol | lamB |
|---|
| ID | 8133910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 3333970 |
|---|
| End bp | 3335277 |
|---|
| Gene Length | 1308 bp |
|---|
| Protein Length | 435 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644866238 |
|---|
| Product | maltoporin |
|---|
| Protein accession | YP_003018514 |
|---|
| Protein GI | 253689324 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4580] Maltoporin (phage lambda and maltose receptor) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.970035 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAA AACTGCTGAC AACATCCATT GCTCTGAGTT TGGCAATGCT GGCAACCCCT
TCTTATTCCG TTGATTTTTC AGGATACTTC CGTTCTGGCG TGGGTGTATC AAACCACGGA
AAACAACAGA CCGCCGATAA GAACTATGTG GGAAGATTGG GTAACGAAGA TGACACCTAC
GGCGAAATCC AATTAGGACA GCAGCTGTAT AACGAAAATG GGAAAACGTT TTACTTCGAT
AGTATGATTT CCATGTTCTC CAACGGCTCA AACGATAATG AAACCACGAA AGATGACGAT
GCCGAGTTTG GTTTACGCCA GTTAAATCTT CAGGCGAAAG GCTTTGTACC TGGGTTGCCG
GATGCCACGG TCTGGGCGGG GAAACGTTAC TACCAGCGCC ATGACTTGCA CATCATCGAT
ACTAAATACT GGAATATTTC CGGTGCGGGT GCCGGGATCG AAAACATCAA AGCCGGTGAA
GGCGCGTTCT CGTTTGCCTG GATCCGCGCC GATGCAGAAA ACATGAAAAT TAACTTAGGC
TGCGACACCA ACACCGACGA ATGTAAAAAA AGAATAGACA TCTACGACGA TCTGAATATC
AACTATCTGG ACGCACGCTA TGCGGGTTGG AAGCCGTGGG ACGGTGCGTG GACAGAGTTC
GGTATCTCCT ACGCGATGCC GAATGAAGCA GATACCCAGA AAAATATCTT CCTCGCAGAA
GGCCAAAAAT TCGATCCTAA AAACTCGATG ATGATCACGG GCGAGCTCAG CCATTACTTC
TCTGGCCTCA AGTCCAACCA GAAACTGGTG CTGCAATATG CCGATAAAGG ACTGGCGCAT
AACATGGTCG ATCAGGGCGG CGGCTGGTAT GACGTCTGGA ACATCAACGA CAGCGCCAAA
GGCTACCGCG TCATTCAGGC CGGTGACCTG CCAATCACTG ATAATATTTC TCTTAGCCAT
GTTCTGACCT ACGGTAAAGC GGATGAAATC AGCCGCTGGC GCGACAGTAC GGAATTATTG
TCTGCGGTAG GTCGTGGCCA GTATGCCTGG ACCAAGAACC AGAAAACCTA TCTGGAAGCG
GGTGCATACC AGAAAAAAGA TAGCTGGACG AGCGGCACGG AAAGCAAATA CAGCGGCCAA
AAATACACGC TGGCGCACGC CTTCAGCGCT GATATTCCGA TGCTGACCCG CCCGGAACTG
CGCTTCTTTG TTTCTTACCT GAACGGCGGG AACGAAAACA AAAACCGCTT CAACGACGAT
CGCAGCAATT CAGTGAACTT CGGTATTCAG GCAGAAGCCT GGTGGTAA
|
|---|
| Protein sequence | MKRKLLTTSI ALSLAMLATP SYSVDFSGYF RSGVGVSNHG KQQTADKNYV GRLGNEDDTY
GEIQLGQQLY NENGKTFYFD SMISMFSNGS NDNETTKDDD AEFGLRQLNL QAKGFVPGLP
DATVWAGKRY YQRHDLHIID TKYWNISGAG AGIENIKAGE GAFSFAWIRA DAENMKINLG
CDTNTDECKK RIDIYDDLNI NYLDARYAGW KPWDGAWTEF GISYAMPNEA DTQKNIFLAE
GQKFDPKNSM MITGELSHYF SGLKSNQKLV LQYADKGLAH NMVDQGGGWY DVWNINDSAK
GYRVIQAGDL PITDNISLSH VLTYGKADEI SRWRDSTELL SAVGRGQYAW TKNQKTYLEA
GAYQKKDSWT SGTESKYSGQ KYTLAHAFSA DIPMLTRPEL RFFVSYLNGG NENKNRFNDD
RSNSVNFGIQ AEAWW
|
|---|
| |