Gene PC1_2820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2820 
Symbol 
ID8133773 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp3192801 
End bp3193811 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content54% 
IMG OID644866108 
ProductSpore coat U domain protein 
Protein accessionYP_003018386 
Protein GI253689196 
COG category[S] Function unknown 
COG ID[COG5430] Uncharacterized secreted protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGAATC CGATACCGAA GATTCCTTTC ACCTTTTCCG CCAACTGGCA GACTATCCGT 
TGGTTGCGTC TGCCCTTGCT CATGATGACA TTCTATTACG CGCCTTTTGG CTATGCCGCC
TGTACCACGC CCCCCAGCAA CACCACGCTG GGGCCTTATG GTTCTTCCGT TGTCGGTGTT
AACGGATCAC CACAGATCGT GGCATCGGGA AGCGGGTTTC GTTGTACGGG GAGTGTGTTG
AGTTTAATCA GTCCCAATAC CATCACCGCG ACGATACAGA GTGACAGCAA CCCCAGCGGG
ACCACCATGC GGCTGCGCAG AGGGACAAGC ACAGACTATG TTCCCTACAG CCTGTGTATG
GATTCCGGCT GCGGTACGCT TTATAACATC AACTCGTCCT ACACCTGGAG CCGGACTACC
TTTCTGGACA TATTAGGCCT GTTCAATTCC ACTGACGGCA CAATGCCGAT CTATATCCGC
ACCAGTACCG GTAACAACAT TTCCGCCGGT ACCTATACCG ACACGGTGAC CATCAAATGG
GATTACCGAC TGTGTGCGCT GGGTGCATTA GGCCTCTGCG TTTACGATGA GGGCTCAACG
ACGTCAACCC TCAATATCAC CATGAATATC ACCAATGATT GCCAGATCAC CAACGCACCG
AATATCAGTT TTGGTACTGC GGCATTTCCC GCCGATTTTG CGGATGTCAA CAATAGCCTC
GGCGTTCGCT GTACGCTGCT GGGCGCATAT ACCGTCAAGC TGGTCAGTAC CCACCCTGAC
GATGCCAATT GGCGCAGAAT GACAGCCACC GTCGGCGGCA CGCCCTACTA CCTGCAATAT
CAGTTATATC GCACCGGGAA TATCGCCTGG ACCGAGACGA ACGATTACAG CGGGACGGGT
TCGGGGATTA CACAGAGTAT CCCGTACACC GCTCGCATTA ACGCCAGTCA GGCCAGCAAG
CCAGAGGGGG CGTATAAAGA TACCGTCACG ATCAACGTCA CAATTAACTA G
 
Protein sequence
MLNPIPKIPF TFSANWQTIR WLRLPLLMMT FYYAPFGYAA CTTPPSNTTL GPYGSSVVGV 
NGSPQIVASG SGFRCTGSVL SLISPNTITA TIQSDSNPSG TTMRLRRGTS TDYVPYSLCM
DSGCGTLYNI NSSYTWSRTT FLDILGLFNS TDGTMPIYIR TSTGNNISAG TYTDTVTIKW
DYRLCALGAL GLCVYDEGST TSTLNITMNI TNDCQITNAP NISFGTAAFP ADFADVNNSL
GVRCTLLGAY TVKLVSTHPD DANWRRMTAT VGGTPYYLQY QLYRTGNIAW TETNDYSGTG
SGITQSIPYT ARINASQASK PEGAYKDTVT INVTIN