Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2787 |
Symbol | |
ID | 8133740 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 3161246 |
End bp | 3162019 |
Gene Length | 774 bp |
Protein Length | 257 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644866075 |
Product | histidine/lysine/arginine/ornithine transporter subunit |
Protein accession | YP_003018353 |
Protein GI | 253689163 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG4598] ABC-type histidine transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0212634 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCGAATA ACAAACTGAT GGTGACGGAA CTGCGTAAAC GCTATGGCCA GCATGAGGTG CTTAAAGGGA TCTCATTACA AGCGAAAGCG GGTGACGTTA TTTCAATTAT TGGCTCGTCC GGTTCGGGAA AAAGCACCTT ACTGCGCTGC ATTAATTTTC TGGAAAAACC TTGTGAAGGA GCGATTTACG TCAGCGATCA GGAAATTCGC ATGGTGCGTG ATACTGACGG ACAGCTGAAG GTGTTTGATA AAAAACAGCT TCAAATGCTG CGGACGCGCC TGACGATGGT GTTTCAGCAT TTCAACCTGT GGAGCTTCAT GACTGCGTTG GAAAACGTGA TGGAAGCGCC GATTCAGGTA TTAGGGCTCA GCAAAGCGGA AGCGCGGGAG CGGGCGGTGT TCTATCTGAA CAAGGTCGGG ATCACCGATT CTGCCCAGCA GAAATACCCG TCTGATCTCT CTGGTGGTCA GCAGCAGCGC GTGTCGATTG CGCGAGCGTT GGCGATGGAG CCGGAAGTGC TACTGTTTGA TGAGCCGACA TCGGCACTCG ATCCTGAACT GGTCGGTGAG GTATTACGTA TCATGCAGCA GCTTGCTGAG GAAGGGAAAA CGATGGTGGT GGTGACGCAT GAAATGGAAT TTGCCCGCCA TGTCTCCAGC CACGTTATCT TTTTACATCA GGGCGTAATT GAAGAAGAAG GCCCACCGGA TCAGCTTTTC GGTAGTCCGA AAAGTGCGCG TTTACAGCAG TTTTTATCAG GTGCATTGAA GTAG
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Protein sequence | MSNNKLMVTE LRKRYGQHEV LKGISLQAKA GDVISIIGSS GSGKSTLLRC INFLEKPCEG AIYVSDQEIR MVRDTDGQLK VFDKKQLQML RTRLTMVFQH FNLWSFMTAL ENVMEAPIQV LGLSKAEARE RAVFYLNKVG ITDSAQQKYP SDLSGGQQQR VSIARALAME PEVLLFDEPT SALDPELVGE VLRIMQQLAE EGKTMVVVTH EMEFARHVSS HVIFLHQGVI EEEGPPDQLF GSPKSARLQQ FLSGALK
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