| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2678 |
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| Symbol | |
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| ID | 8133631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3037425 |
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| End bp | 3038534 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644865966 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003018244 |
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| Protein GI | 253689054 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTCGGC TCAACTCTGC CACTATTGCT GTTTGCCTGT TGCCTCTCGC CCTAGTGGCG
TGCGGTGATG CTTCTGACGT CGACGATCCT CGCAATCAGC CCCCGCTGGT GAGAGCGGCT
ACCGTGGCGA GCGCCGCTGA TGCCTCGCGC GCATTTACTG GTGTGGTTGT CGCACGAATC
CAAAGCGATC TGGGTTTTCG GGTACAAGGC AAAATCCTTG AACGTTTGGT GGACACCGGG
CAGACCGTGA AACGCGGTCA GCCTTTGATG CGCTTAGACC CTATCGATCT CAGCCTGCAG
GCACAAGCCC AGCAGCAGGC TGTTACCGCG GCTCGCGCCC GCGCCAGACA GGCGACCGAT
GATGAAACTC GCTATCGTGG TCTGGTTGCA GCAGGTGCGG TATCCGCTTC AGCCTACGAT
CAGATCAAGT CCGCTGCCGA GACGGCGAAA GCGGAGCTGA GTGCCGCGCA GGCTCAGGCC
GATGTAGCGA AAAACGCGAC AGGCTATGCC GTGCTGCTGG CCGATGCTGA CGGTGTGGTC
ATGGATACGC TGGCAGAACC CGGTCAAGTG GTGAGTGCAG GGCAAGCTGT CGTCAGATTG
GCTCGGGCAG GGCAACGCGA GGCCATCGTG CAACTGCCTG AAACGCTACG GCCAGCGGTT
GGGAGCGAAG CGCAGGCAAC CCGCTATGGC ACCGAACAAC AGCGTGTTTC CGCGAAACTG
CGGGTGCTAT CCGATGCGGC TGATCCGCTG ACGCGTACCT TTGAAGCGAG GTATGTGCTT
GACGGCGCGC TGGCGAGTGC CCCACTCGGC TCCACCGTTA CGCTCCATAT TGAGAAAGAG
GATACATCCC GCCAGATGCT GCAGGTGCCG CTGGCGGCAA TCTATGATTC GGGGAAAGGG
CCGGGTGTCT GGCGTATTTC CGGTGACCCA GCCAAAGTAT CATGGCAACC CGTTGAGATG
TCTGGCCTTA GCGACGACAG GGCAAGGGTG GCCGGAAACC TTAAGCCGGG GGAACAGGTC
GTCGCTTTGG GCGCACACTT GCTGCATGAC GGCGAAGCGG TTCGAGTGAT TGAACCACGC
GGCGCCAGCG TTGCCGGGAG TCAGCCATGA
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| Protein sequence | MLRLNSATIA VCLLPLALVA CGDASDVDDP RNQPPLVRAA TVASAADASR AFTGVVVARI
QSDLGFRVQG KILERLVDTG QTVKRGQPLM RLDPIDLSLQ AQAQQQAVTA ARARARQATD
DETRYRGLVA AGAVSASAYD QIKSAAETAK AELSAAQAQA DVAKNATGYA VLLADADGVV
MDTLAEPGQV VSAGQAVVRL ARAGQREAIV QLPETLRPAV GSEAQATRYG TEQQRVSAKL
RVLSDAADPL TRTFEARYVL DGALASAPLG STVTLHIEKE DTSRQMLQVP LAAIYDSGKG
PGVWRISGDP AKVSWQPVEM SGLSDDRARV AGNLKPGEQV VALGAHLLHD GEAVRVIEPR
GASVAGSQP
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