Gene PC1_2428 details

Gene Information

• Locus tag: PC1_2428
• ID: 8133374
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: -
• Start bp: 2784387
• End bp: 2786261
• Gene Length: 1875 bp
• Protein Length: 624 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 644865710
• Product: heme lyase subunit NrfE
• Protein accession: YP_003017995
• Protein GI: 253688805
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTGTTAT TGCCAGAATG TGGATATGTG GCGCTGTTGC TGGCGGTTTG CGTCGGTGTG 
GCGACAGCGT TGCTAACATT TTCAGGCTAC ACCCTGCGCT GGTCGGGTAC GTACCGACTG 
GCGCGGTGCT GGACGTTGGT GCTGTTTGGC TTTGTGCTGT TCGCGTTTGT CGCGTTGACG 
CTGAGCGTGG TGCAGGATGA TTTTTCTGTT AATTACGTCG CTCAGCATAG CCACCGTGAT 
TTACCGCTAG GGCTAAAGAT TGCCGCGGTC TGGGGCGGGC ATGAAGGATC GCTACTGCTG 
TGGCTGTTAT GTTTAACTGG CTGGAGCGCT GCGTTCGCCT TCCGCTACCG TAAGGCGACG 
AGCGACCTGT TCCCGCTGAC GCTGGCGGTA TTGGCCGTGA TAGCGACCGC GTTGCTGGTC 
TTCATTGTAT TTTTTTCCGA TCCCTTTGTG CGTCTCTTCC CGCCTGCGGT GGCGGGAAGG 
GATCTCAACC CTATGCTGCA ACACATTGGC CTCATCCTCC ATCCGCCGCT GCTCTATATG 
GGCTATGGCG GATTAACCGT GAGTGCGGCG CTGGCGTTAG CGGCCCTGAT CCACGGTGAG 
TTTACGGCAC CTGCTGCCTG GATCTGCTGG CGCTGGACGC TGCCTGCATG GAGCCTGTTA 
ACGCTGGGGA TCATCCTGGG ATCGTGGTGG GCCTATAACG AACTCGGCTG GGGAGGATGG 
TGGTTCTGGG ATCCGGTAGA AAATGCCTCG CTGCTCCCTT GGTTAACGGC CAGTGCATTG 
CTTCACAGCC TGTCGGTTAC CCGCATGCGC GGCATCTTCC GTCATTGGTC GCTCATATTG 
GCATTGCTGA CGTTCATTTT ATGTCTGCTG GGCACGCTGA TCGTGCGCTC CGGGATACTG 
GTTTCCGTCC ATGCCTTCGC TCTCGAACAT GACCGCGCGG TGCCTTTATT TATTCTGTTT 
GCCTGCTTAA GTATGGCGGC GCTGGCGGTT TACGGCTGGC GCGCTCAGCT TGTCCGCTCC 
GCTGCCCGCT TCTCCGGCTG GTCGCGGGAA ATCGCGCTAC TGCTGGTGCT GCTGTTATTC 
AGCGCCGTCG CGCTGGTGGT GCTGCTTGGC ACGCTTTACC CGATGATCTA TGGGTTAGCG 
GGGTGGGGAA AGATCTCCGT AGGTGCGCCC TATTTTAATC GTGTGCTCTT GCCCTTCGGC 
GGGTTGATGC TGTTGCTCAT TGGGGTAGCG GCAGGTGGCT ATTGGAAACG CAGCGCGCGA 
TGGCCTGTCC GGCGCTTAGG CATCACGCTG GCGGTCGGTG TCGTCACCTC GCTGATCCTG 
TGGCCGTATG GGGTCGCCGT CGCTTTGGCT GCGGGGTTGA TCGGCTGGGT GATGGCTGCG 
CAGTGGTTAC AGCCGCTGTC CGCGATACGC CACCAGCTTC CTGCACTGCT GGCACATACG 
GGCGTGGCGC TGTTTGCCTT GGGGATTGTG TTCTCTGCGG GCAGCAAACA GGAAATCAGC 
GCCAATGTGG GGCAGGGAGA ACAGGTCACG CTGGGCGACT ACCATTTTCG CTTTTTACAG 
CTGGATTTAG TGGCGGCGCA GAATTACACC GCAGAGCAGG CCGTGATTGC GATTTATCGT 
GGCGACTCGC CAATCGCCCG CGTCATGCCG GAACGTCGTT ATTACAACGC ACGCAAGCAG 
CAGATGATTG AACCGGGTAT TGCCTGGGGG CCGATCAGAG AATGGTATGC CGTGATGGGC 
GAGAAAACCG GCGAAAACCG CTACGCCATG CGGTTTTATG TGCAAACCGG TGTTCGCTGG 
GTGTGGGGTG GCGGCCTGTT GATGGTCGCG GGCGCATTGC TGGGGTGGTT CAGAGGAAGA 
AAAGCCTATG ACTAA 

 

Protein sequence

MLLLPECGYV ALLLAVCVGV ATALLTFSGY TLRWSGTYRL ARCWTLVLFG FVLFAFVALT 
LSVVQDDFSV NYVAQHSHRD LPLGLKIAAV WGGHEGSLLL WLLCLTGWSA AFAFRYRKAT 
SDLFPLTLAV LAVIATALLV FIVFFSDPFV RLFPPAVAGR DLNPMLQHIG LILHPPLLYM 
GYGGLTVSAA LALAALIHGE FTAPAAWICW RWTLPAWSLL TLGIILGSWW AYNELGWGGW 
WFWDPVENAS LLPWLTASAL LHSLSVTRMR GIFRHWSLIL ALLTFILCLL GTLIVRSGIL 
VSVHAFALEH DRAVPLFILF ACLSMAALAV YGWRAQLVRS AARFSGWSRE IALLLVLLLF 
SAVALVVLLG TLYPMIYGLA GWGKISVGAP YFNRVLLPFG GLMLLLIGVA AGGYWKRSAR 
WPVRRLGITL AVGVVTSLIL WPYGVAVALA AGLIGWVMAA QWLQPLSAIR HQLPALLAHT 
GVALFALGIV FSAGSKQEIS ANVGQGEQVT LGDYHFRFLQ LDLVAAQNYT AEQAVIAIYR 
GDSPIARVMP ERRYYNARKQ QMIEPGIAWG PIREWYAVMG EKTGENRYAM RFYVQTGVRW 
VWGGGLLMVA GALLGWFRGR KAYD