| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2374 |
|---|
| Symbol | |
|---|
| ID | 8133318 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2732515 |
|---|
| End bp | 2733819 |
|---|
| Gene Length | 1305 bp |
|---|
| Protein Length | 434 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644865654 |
|---|
| Product | sodium:dicarboxylate symporter |
|---|
| Protein accession | YP_003017941 |
|---|
| Protein GI | 253688751 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1301] Na+/H+-dicarboxylate symporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA ACAGCTTATT GTTTTTTATC GCCTTGGCTA TTGTTCTCGG AATTATTGTT
GGCGGGATTT GTCATTCTTT ATTAACTGAG CAGCAAGCTA AAGAAGTCGT CTCCTACTTT
AATTTAGTGA CCGATGTTTT TCTTCGTCTG ATAAAAATGA TTATTGCGCC ATTGGTATTC
GCCACATTGG TATCTGGTCT TGCCAGTATG GGGAATTCTT CTTCCGTCGG CCGAATAGGT
CTGAAGGCTA TGGTGTGGTT TATTTGTTCT TCAATGGTTT CCCTTTTTAT TGGCATGTTA
TTGGCAAATA TCTTCGAGCC CGGTGTTGGC ATGAACCTCG CCATTCCCAG TACGCCAATA
GCGGTAGATA CTGGCGTAAG TACCGGTGGA TTTACGCTGA AAAGCTTCAT TGCCCATATA
TTTCCACGCA GCATCGTCGA GGCGATGGCG AATAATGAAA TATTGCAGAT CCTGGTGTTC
TCGATGTTTT TTGGTTCTGC ACTGGCTTTT GTGAAAGGCC AAAACAAGCA TGCGGTTACC
ATGGAATCGA TGGTCGAGGA ACTGGCGAAA GTGATGTTTC GGGTGACGGA CTATGTCATG
CGATTAGCGC CTTTGGCCGT ATTTTCCTCG CTGGCGTCTT CTATTACGAC GGAAGGTCTG
GGGCTTCTGC TCGACTTTGG CAAGGTCATC GGTGAGTTTT ACCTTGGGTT GGCGCTGCTA
TGGGGGCTTA TGTTCGGTGC CGGTGCGCTG TTCCTCGGCA AGAAAGCAAC CTGGGGGTTG
ATCAAACTGT TGCGTGAACC CAGTATGCTG GCTTTTGCCA CCGCCAGCAG CGAAGCGGCC
TATCCAAAAA CAATGGAAGC GCTGAGCGAG TTCGGCGTTC CTAAAAAAAT CACCAGCTTT
GTACTCCCGT TGGGGTATTC CTTTAACCTT GTCGGCTCCA TGATATATCA GGCGTTTGCC
ATTCTGTTTA TCGCGCAGGC TTACAATATT CACCTCAGTT TGACGCAGCA GACGCTGATT
CTGCTGACGT TGATGATTAC CAGTAAAGGT ATGGCGGGCG TAGCACGTGC GGCGGTGGTG
GTGGTGGCGG CGACATTGCC GATGTTCAGC TTACCCGAAG CTGGCATTTT ACTGATTATT
GGTATCGACC AGTTCCTGGA TATGGGCCGC ACGGCGACCA ATGTGATTGG TAACGGCATG
GCGACGGCAG TTGTTGCCAA GCTGGAACGC AACCACGATC TGGAAGAACC CGAGCATGAG
CATTCCGAGG AAGAAGCCCC TGTGATGGCA ACCGGAAATG TCTAA
|
|---|
| Protein sequence | MKKNSLLFFI ALAIVLGIIV GGICHSLLTE QQAKEVVSYF NLVTDVFLRL IKMIIAPLVF
ATLVSGLASM GNSSSVGRIG LKAMVWFICS SMVSLFIGML LANIFEPGVG MNLAIPSTPI
AVDTGVSTGG FTLKSFIAHI FPRSIVEAMA NNEILQILVF SMFFGSALAF VKGQNKHAVT
MESMVEELAK VMFRVTDYVM RLAPLAVFSS LASSITTEGL GLLLDFGKVI GEFYLGLALL
WGLMFGAGAL FLGKKATWGL IKLLREPSML AFATASSEAA YPKTMEALSE FGVPKKITSF
VLPLGYSFNL VGSMIYQAFA ILFIAQAYNI HLSLTQQTLI LLTLMITSKG MAGVARAAVV
VVAATLPMFS LPEAGILLII GIDQFLDMGR TATNVIGNGM ATAVVAKLER NHDLEEPEHE
HSEEEAPVMA TGNV
|
|---|
| |