Gene PC1_2336 details

Gene Information

• Locus tag: PC1_2336
• Symbol: pspF
• ID: 8133280
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 2685366
• End bp: 2686352
• Gene Length: 987 bp
• Protein Length: 328 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 644865617
• Product: phage shock protein operon transcriptional activator
• Protein accession: YP_003017904
• Protein GI: 253688714
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG1221] Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
• TIGRFAM ID: [TIGR02974] psp operon transcriptional activator PspF

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.816239
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTCAGG AAAAAGAGAA TCTGCTGGGC GAGGCCAACA GCTTTTTAGA GGTACTGGAA 
CAGGTGTCAC AGTTGGCCCA GTTGAATAAG CCAGTGCTGG TAATCGGCGA ACGCGGTACG 
GGTAAAGAGC TGATTGCCAG CCGCCTGCAC TACCTTTCCC CCCGTTGGCA AGGGCCATTT 
GTTTCTCTGA ACTGTGCGGC ACTCAACGAG AACCTGCTCG ACTCCGAGCT ATTTGGTCAC 
GAAGCCGGTG CCTTTACCGG CGCGCAGAAA CGCCATCTGG GACGCTTCGA GCGCGCCGAC 
GGCGGAACGC TATTTTTGGA TGAGCTAGCC ACCGCGCCGA TGCTGGTGCA GGAAAAATTA 
CTGCGGGTGA TCGAATACGG CATGCTGGAG CGCGTCGGCG GCAGAGATCA GCTACAGGTT 
GATGTGCGGT TGGTGTGTGC GACCAATGAC GACCTGCCTG CACTTGCCGC CAGCGGTAAA 
TTCCGTGCCG ACCTGCTTGA CCGTCTGGCC TTTGACGTTG TGCAGCTTCC GCCGCTGCGC 
GAACGCCAGC AGGACATCAT GCTGCTGGCC GATCACTTTG CGATTCAGAT GTGCCGCGAA 
TTACATCTGC CGCTGTTTCC CGGTTTCACA CCCGCCGCGC GCCAGACGCT GCTGAATTAC 
GGCTGGCCAG GCAATATCCG CGAGCTGAAA AACGTCGTTG AGCGCTCGGT GTATCGTCAC 
GGCGACAGCG AACAGCCTCT TGATGCCATC ATTCTGAATC CCTTCCGTCG GACTCCCGCC 
ATTCAGGAAA AAACACAAGC CACATCTGGT CAGCCGGATT TACCGCTGGA TATGAAACCG 
TGGCTACTGG AACAAGAAAA AAGCTTGATC GATCGGGCAT TAACTCAGGC AAAGTTTAAC 
CAACGTAAAG CCGCTGAACT GCTGGGATTA ACCTATCACC AACTGCGTGG ATTACTGAAG 
AAACACGATA TCGCGGTAAA TGAGTGA 

 

Protein sequence

MLQEKENLLG EANSFLEVLE QVSQLAQLNK PVLVIGERGT GKELIASRLH YLSPRWQGPF 
VSLNCAALNE NLLDSELFGH EAGAFTGAQK RHLGRFERAD GGTLFLDELA TAPMLVQEKL 
LRVIEYGMLE RVGGRDQLQV DVRLVCATND DLPALAASGK FRADLLDRLA FDVVQLPPLR 
ERQQDIMLLA DHFAIQMCRE LHLPLFPGFT PAARQTLLNY GWPGNIRELK NVVERSVYRH 
GDSEQPLDAI ILNPFRRTPA IQEKTQATSG QPDLPLDMKP WLLEQEKSLI DRALTQAKFN 
QRKAAELLGL TYHQLRGLLK KHDIAVNE