Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2315 |
Symbol | |
ID | 8133259 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2656086 |
End bp | 2656853 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644865596 |
Product | integrase family protein |
Protein accession | YP_003017883 |
Protein GI | 253688693 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0582] Integrase |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0961638 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGAGAACTG TCGATAACTA CATTGCCCTA CTCTGCTCAC TACTCCGCTT TGCGCACCGC TCTGGTTTCA TATCAGGTAG GCCATTTGAG GGGATAAAGA AGCTGCAAAA AAGCCGCCCA CGCCCCGATC CGTTACTTAA GCATGAGTTT GACCAGCTTA TCGGTAGTTT GTCGGGGCAA AGCAAGAACC TATGGCAATT GGCAGTTTAC ACCGGGCTAC GCCATGGTGA GTTAGCCGCA TTGGCCTGGG AAGATATCGA CCTGGATGCA GGTGTTATCC ATATCTCACG TAATTTAACC ATCCTCGGGC ACTTTGGCCC GCCTAAAACT CAGGCTGGCA TCCGTACAGT CACCTTGCTT AAACCGGCTC TGGAAGCGCT TCAGTCTCAA ATGAAAACCA CGGGGAACAA GCGCACGAAC GATATTGTCT ATCACCACAG AGAATATGGC CTTACTGAAA TCCAGCGTTT ACGCTTCGTT TTTCTACCGC GAGTACGCAA CGGTGAGCAA AAAATCAGTT ACTCATGCGG CACCATGGGA TCATTGTGGA ACACTGCTGT AAAACGATCT GGTATTCGTC GCCGTAATCC GTACCATACG CGCCATACTT ATGCTTGCTG GTTACTCTCG GCAGGTGCAA ACCCTTCGTT TATTGCGAAC CAAATGGGAC ATGAGAACGC GCAAATGGTG TATGAAATCT ACGGGAAATG GATTGAAGAC ATGAATGAAG ATCAGGTTGG CATGCTGAAT CGGAAACTCG CGCTGTGA
|
Protein sequence | MRTVDNYIAL LCSLLRFAHR SGFISGRPFE GIKKLQKSRP RPDPLLKHEF DQLIGSLSGQ SKNLWQLAVY TGLRHGELAA LAWEDIDLDA GVIHISRNLT ILGHFGPPKT QAGIRTVTLL KPALEALQSQ MKTTGNKRTN DIVYHHREYG LTEIQRLRFV FLPRVRNGEQ KISYSCGTMG SLWNTAVKRS GIRRRNPYHT RHTYACWLLS AGANPSFIAN QMGHENAQMV YEIYGKWIED MNEDQVGMLN RKLAL
|
| |