| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2212 |
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| Symbol | |
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| ID | 8133156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2542570 |
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| End bp | 2543223 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644865500 |
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| Product | type III secretion system protein |
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| Protein accession | YP_003017787 |
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| Protein GI | 253688597 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4790] Type III secretory pathway, component EscR |
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| TIGRFAM ID | [TIGR01102] type III secretion apparatus protein, YscR/HrcR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCTCCG GCGCGTTCGA TCCGTTGATG TTTGCGCTCT TTCTGGGCGC ACTCTCCCTG
ATTCCGCTGA TGATGATTGT CTGCACCTGC TTTCTGAAGA TTGCCATTGT GCTGCTGATC
ACCCGCAACG CCATCGGGGT ACAGCAGGTA CCGCCCAATA TGGCGCTGTA CGGCATCGCG
CTCGCGGCAA CGCTGTTTGT GATGGCACCG GTCTTTCAGG ACATCAGCAA GCGCGTGCAG
GAAAAGCCGC TGGATATGAC CGATATCACG TCGCTTCAGG CCAGCGTGAC CTACGGTCTG
GAACCGCTGC AAACCTTTAT GTCGCGCAAC GTTGACCCGG ATATTCTCAC CCATCTGCAT
GAGAACAGCC TGCAAATGTG GCCCGCGTCG CTATCAGAAA AGGTGAATAC GCAAAATCTG
CTGCTGGTGA TCCCGGCTTT CGTGCTGTCG GAGCTACAGG CCGGGTTCAA AATCGGCTTC
CTGATTTATA TCCCGTTTAT CGTCATCGAC CTCATCGTCT CCAACGTGCT GCTGGCGCTG
GGGATGCAGA TGGTCGCGCC AATGACGCTG TCGCTGCCGT TAAAGCTGCT GCTGTTCGTG
CTGGTGAACG GCTGGACGCG GCTGCTTGAC GGCCTGTTTT ACAGCTATCT GTGA
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| Protein sequence | MTSGAFDPLM FALFLGALSL IPLMMIVCTC FLKIAIVLLI TRNAIGVQQV PPNMALYGIA
LAATLFVMAP VFQDISKRVQ EKPLDMTDIT SLQASVTYGL EPLQTFMSRN VDPDILTHLH
ENSLQMWPAS LSEKVNTQNL LLVIPAFVLS ELQAGFKIGF LIYIPFIVID LIVSNVLLAL
GMQMVAPMTL SLPLKLLLFV LVNGWTRLLD GLFYSYL
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