| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2206 |
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| Symbol | |
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| ID | 8133150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2536039 |
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| End bp | 2538141 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644865494 |
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| Product | type III secretion protein, HrcV family |
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| Protein accession | YP_003017781 |
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| Protein GI | 253688591 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4789] Type III secretory pathway, component EscV |
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| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCTGC TGATTACCTG GCTGAACCGT ATTGCGCTGA GCGCGATGCA GCGCTCCGAG
GTCGTTGGTG CGGTCATCGT GATGTCTATC GTTTTCATGA TGATCATCCC GCTGCCTACC
GAGTTGATCG ATGTGCTCAT CGCGCTCAAC ATCTGCGCCT CTTCTCTGCT GATCGTGCTG
GCGATGTATC TGCCCAAGCC GCTGGCCTTC TCGACGTTTC CCGCGGTGCT GTTGTTGACC
ACCATGTTCA GACTGGCGAT CTCCATTTCC ACCACACGCC AAATCCTGCT CCAGCAGGAC
GGTGGCCATA TCGTTGAGGC TTTCGGTAAC TACGTGGTAG GCGGGAATCT GGCGGTTGGT
CTGGTTATCT TTCTGATTCT GACGGTGGTG AACTTTCTGG TGATCACCAA AGGCTCCGAG
CGCGTAGCTG AGGTAGCGGC ACGTTTCACA CTGGATGCGA TGCCCGGCAA ACAGATGTCC
ATCGACAGCG ATCTGCGTGC CGGGCTGATC GAAGCCCATC AGGCGCGGCA GCGGCGCGAA
AATCTGGCAA AAGAAAGTCA GTTATTCGGG GCGATGGACG GCGCGATGAA GTTCGTCAAA
GGTGATGCCA TTGCGTCGCT GGTTATCGTG TTCATCAATA TGATAGGCGG TTTCGCCATC
GGCGTGTTGC AGCACAATAT GGCCGCGTCC GATGCCATGC ACGTCTACTC GGTTCTGACT
ATCGGTGACG GACTGATCGC CCAAATCCCG GCGCTACTGA TATCGCTGAC GGCAGGGATG
ATCATCACCC GCGTCTCGGC CGATGGGCAA AAAGTGGATG CCAATATTGG TCGGGAAATC
GCGGAACAGC TCACCAGCCA GCCCAAAGCG TGGATCATCT CCTCCATCGG CATGTTTGGC
TTTGCGCTGC TGCCGGGGAT GCCGACGCTG GTGTTTGTCG CTATCAGTCT GGCGTCGCTC
GGCAGTGGTC TGTTTCAGCT TTGGCGCATC AAGCAGCAAG GTCAGTTGGA TGCCAGCCAG
TCGGAGGCGG ACAACATGCC AGCCGAACAG AACGGCTATC AGGATCTGCG GCGTTTCAAC
CCCACCCGTG CCTATCTGCT GCTGTTTCAT CCCATCTGGC AAGGACAGCC GACGGCAACG
GCGCTGGTGC AGAATATCCG CCGCCTGCGT AACAAACTGG TCTATCGCTT CGGTTTTACG
CTGCCGTCTT TTGATATCGA ATTCAGCGAT CGGCTGGCGG AGGATGAATT TCAGTTTTGC
GTCTATGAAA TTCCCTACGT GAAAGCCACC TTTGTCACCG ATCGGTTGGC TGTTGCCAGT
GCTGCCGTTG AACAGGTTGA TACCGAGCTT GCCACGCCGG GTCCCACGCT GCGGGATGAA
AGCCAATGGC TCTGGCTGCC GTTGGCTCAT GTTTCGCAGC AGCCCGACGA CGTACCGCGC
TGGACAGCGG ATGAGCTGAT TCTGGCACGT ATGGAGCAGG CTATTCATCG TACCGGTTCA
CAATTCATCG GCTTGCAGGA AACCAAATCC ATTCTGGCCT GGCTGGAGAG CGAACAGCCG
GAATTGGCGC AGGAGCTACA GCGCATCATG CCGCTCTCGC GTTTCGCCAG CGTGCTGCAA
CGACTGGCTT CCGAACGCGT GCCGCTTCGA TCGGTGCGCC CCATCGCCGA GGCGCTGATT
GAAGTCGGCC AGCATGAGCG GGATACGCTG GCGCTGACCG ACTACGTGCG CCTGGCGCTC
AAATCGCAAA TCTGCCACCA GTACAGCGAT GAAAACAGCC TTGCCGTCTG GCTACTGACG
CCGGAAAGCG AAGAACTGCT GCGTGATGCG CTGCGCCAGA CGCAGAACGA AACCTTCTTC
GCCCTGACAC AGGACTACGC CTCCACGCTG CTCAGCCAGC TGCGGCAGGC GTTTCCGCCG
CTCTCGTCGC AGCGCAGTCT GGTGCTGGTG GCGCAGGATT TACGCAGTCC GCTGCGTACG
CTGTTACAAG ACGAATTTCA CCACGTTCCG GTACTGTCCT TCACCGAGCT GGAATCCACC
CTGTCGATCA ACGTCATTGG GCGTCTCGAT CTTTACGACT CCCCCGATCC CTTTAGCGCA
TAG
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| Protein sequence | MNLLITWLNR IALSAMQRSE VVGAVIVMSI VFMMIIPLPT ELIDVLIALN ICASSLLIVL
AMYLPKPLAF STFPAVLLLT TMFRLAISIS TTRQILLQQD GGHIVEAFGN YVVGGNLAVG
LVIFLILTVV NFLVITKGSE RVAEVAARFT LDAMPGKQMS IDSDLRAGLI EAHQARQRRE
NLAKESQLFG AMDGAMKFVK GDAIASLVIV FINMIGGFAI GVLQHNMAAS DAMHVYSVLT
IGDGLIAQIP ALLISLTAGM IITRVSADGQ KVDANIGREI AEQLTSQPKA WIISSIGMFG
FALLPGMPTL VFVAISLASL GSGLFQLWRI KQQGQLDASQ SEADNMPAEQ NGYQDLRRFN
PTRAYLLLFH PIWQGQPTAT ALVQNIRRLR NKLVYRFGFT LPSFDIEFSD RLAEDEFQFC
VYEIPYVKAT FVTDRLAVAS AAVEQVDTEL ATPGPTLRDE SQWLWLPLAH VSQQPDDVPR
WTADELILAR MEQAIHRTGS QFIGLQETKS ILAWLESEQP ELAQELQRIM PLSRFASVLQ
RLASERVPLR SVRPIAEALI EVGQHERDTL ALTDYVRLAL KSQICHQYSD ENSLAVWLLT
PESEELLRDA LRQTQNETFF ALTQDYASTL LSQLRQAFPP LSSQRSLVLV AQDLRSPLRT
LLQDEFHHVP VLSFTELEST LSINVIGRLD LYDSPDPFSA
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