Gene PC1_2195 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2195 
Symbol 
ID8133139 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp2525433 
End bp2526032 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content59% 
IMG OID644865483 
Producttype III secretion apparatus protein, HrpE/YscL family 
Protein accessionYP_003017770 
Protein GI253688580 
COG category 
COG ID 
TIGRFAM ID[TIGR02499] type III secretion apparatus protein, HrpE/YscL family 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGACGA CGAAAACGTT TGTGACATTA CCCGATGCCA GTCGGGATGA AACGGTGATT 
ATTCCGGCGG AGCGGGTCGC GGCACATCGG CGCAGTCGGA CACTTTGGGA AGAGGCCAAT 
GCGCAGGCCG ATACGATCGT GGCGCAGGCG CACGAACGTG CCCGAACGCT GTGTGAGCAG 
GCAGTAGAAC AGGCAGAAGC GGAATTCTGG CAGCAGGCAA ATGTGCTGTT GCAGGGGGTT 
CGGCAAGACC GAATGCAGAT GGAGCAGGTC ATGATTACGC AAGCCGGACA GCTACTGCGC 
GATGCGCTGG CACATCTGCT GGATAAAACA CCTGCGCCGT CGCGCCATCA CGCTTTACTG 
CGGCAGTTGT TGAAGCAACA GCAGGGGGAA AGCCGGGGAA CACTGTATTG CCATCCCGCC 
CAGCTTGCCG ATGTGCAGTA TTGGCTGGAT GCCCATGCGC ATCTGGAATG GCGTCTTGCC 
AGCGATGAAG CGCTGGATAA CGATGCCATG AAGCTGATTA CGGCGCACGG CGTGATGTCG 
TTGAGCTGGC GGCAGGCGGT AAAACAGCTC ATGCCGCCGG AGTATCCTGC CGCGATGTGA
 
Protein sequence
MLTTKTFVTL PDASRDETVI IPAERVAAHR RSRTLWEEAN AQADTIVAQA HERARTLCEQ 
AVEQAEAEFW QQANVLLQGV RQDRMQMEQV MITQAGQLLR DALAHLLDKT PAPSRHHALL 
RQLLKQQQGE SRGTLYCHPA QLADVQYWLD AHAHLEWRLA SDEALDNDAM KLITAHGVMS 
LSWRQAVKQL MPPEYPAAM