Gene PC1_2172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2172 
Symbol 
ID8133116 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp2485892 
End bp2486497 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content41% 
IMG OID644865460 
ProductLysine exporter protein (LYSE/YGGA) 
Protein accessionYP_003017747 
Protein GI253688557 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAACAGTT ATCTGAGTTT TGCCGCTATT GCACTGACCG TTGTTTTCAT GCCAGGGCCA 
GGAACAGTAA AGTCGATCGC CAACTCAATA AACTATGGAC TAAAAGGGTC TATCGTTGGC 
ATTTCTGGAT TAACCATCGG TGTCTGTGCG GTTGCCGGGC TCTCTGCAAC CAGCCTGGGG 
TTGCTCCTTG TCTCATCACC ACGTGCCTTT AAGGCCATCT CTTATTGCGG TGCTCTTTAT 
TTGTTCTATC TTGGTGTGAA GTTGTGGTTT ACTCAAAATA AAGTTATGAC GATTGAGAAT 
GCGAAAGTCA TTAGAAAAAG ACGTATTTTC ACAGAAGGCG TGCTCTTACA ATTTACGAAC 
CCAAATGCTA TCTTGTTTTT CTTTTCTATT TTCCCTCACT TTATTGATAG GCGACAGGAT 
TACTTACTGC AATTTTTATC TCTGGTGGGA ATCTTCTGTT TAGCGTTTGT CTGCGCGCAT 
GCAACATATG CGACGATTGC CTATAAGGCG AAGTCTATTT TTAATCGTGA AGATAATACA 
CTACTGAATA GGGTCAATGC TGTGTTCTTT ATTTTATTAT CTGTTTATCT GGCAAGCAGT 
TCTTAG
 
Protein sequence
MNSYLSFAAI ALTVVFMPGP GTVKSIANSI NYGLKGSIVG ISGLTIGVCA VAGLSATSLG 
LLLVSSPRAF KAISYCGALY LFYLGVKLWF TQNKVMTIEN AKVIRKRRIF TEGVLLQFTN 
PNAILFFFSI FPHFIDRRQD YLLQFLSLVG IFCLAFVCAH ATYATIAYKA KSIFNREDNT 
LLNRVNAVFF ILLSVYLASS S