| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2071 |
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| Symbol | |
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| ID | 8133015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2375565 |
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| End bp | 2376731 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644865360 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_003017647 |
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| Protein GI | 253688457 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.805165 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAT ATGTTTTTCC GCTGTTGCTG GCATTTGCAC CTCAATCCCA CGCAGCTGGG
TCTGGTGTTG ATTTTGAACT GAAGAGCGTT ACCGTGCCAG ATGCATTGTC TATTTTTTAC
ACGCAGATAC TAAAAAAGCC ATTCAGGCTG TCGCCGGATG TGGTTGGAAT GCCCGAAAAA
ATATCGTTCC GTTTGATGCC AGAACAGGAC GCTAGGCAAT TTCTGATTGA CTATATGGGC
GACATTGGAG TGGTGGTGAA AACCAAAAAC GGGGCAGATT TTTTCTATAA ACCGATTCAG
ATTGAGAAAA AAATACCTCA ATTCTCATAT ACCTATCAAC CGCGCTACCG TTCGGTTGAG
TACCTATCAG CCCAACTAGT GCCGATGGCG GGCGAGGGTG GGAAATTCAA TTCCTCATCT
ACTGATAAAA ACTCACCAGA TTCGTTGGTA TTTTACGGTA CGCGGGCTGA AATTAGGCGT
ATTAGCGAGG CGCTGCCACT AATCGACATT CGGGCAGATG AAGTTGTTGT TTCTGGCTAC
GTTTATGAAA TTCAGACTAA TTCCCGCGAT GGTTCGGGGT TGCAGCTGGC AGCTAGCCTG
CTGAATTCAA AATTAAATTT TCAAATAGGA GGTAGCGACT CTCGAGGATA TGAAAATTTT
CTGAAAATCA GTTCGGGGTC GATGAATGCG TTGGTAGAAT TGTTCAAAAC GGACACGCGT
TTTAGCACCG TTTCCGCGCC AACACTCAGA GTCCGTTCGG GCGCCAATGC AGTTTTTTCG
GTTGGGAACT CGACGCCAAC ACTCGGGAGC ACCAGTTTTC AGGGGCAGTC AGCCATACAA
TCTGTGGTTT ATCGAGACGC AGGGGTGATT TTTGATGTAT CCCCAGCAGT CCGATTGGAT
GCTATCGACC TGAGAATTAG GCAGGAATTG AGCAATTTTA CATCGACACA GAATGGTGTT
AATGATTCAC CAACGCTGAT AAAACGCGAA ATCTCTACCG ATATTTCGTT GAGCGATGGG
GACATCATTT TGCTAGGCGG TCTGGCTGAT GATAAAAAAA CGGCCTCGGG AACCGGCTTT
TCATGGTTGC CGTCGTTCAC CAGTCAGGGT TCTAGTGCAG ACAAAACTGA TATTGTTATC
GTTTTGCAGG TCAGAAAAAT CCGCTGA
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| Protein sequence | MKKYVFPLLL AFAPQSHAAG SGVDFELKSV TVPDALSIFY TQILKKPFRL SPDVVGMPEK
ISFRLMPEQD ARQFLIDYMG DIGVVVKTKN GADFFYKPIQ IEKKIPQFSY TYQPRYRSVE
YLSAQLVPMA GEGGKFNSSS TDKNSPDSLV FYGTRAEIRR ISEALPLIDI RADEVVVSGY
VYEIQTNSRD GSGLQLAASL LNSKLNFQIG GSDSRGYENF LKISSGSMNA LVELFKTDTR
FSTVSAPTLR VRSGANAVFS VGNSTPTLGS TSFQGQSAIQ SVVYRDAGVI FDVSPAVRLD
AIDLRIRQEL SNFTSTQNGV NDSPTLIKRE ISTDISLSDG DIILLGGLAD DKKTASGTGF
SWLPSFTSQG SSADKTDIVI VLQVRKIR
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