| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1884 |
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| Symbol | |
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| ID | 8132827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2175977 |
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| End bp | 2177143 |
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| Gene Length | 1167 bp |
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| Protein Length | 388 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644865173 |
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| Product | Oligogalacturonide lyase |
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| Protein accession | YP_003017461 |
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| Protein GI | 253688271 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00177498 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCAAAG GTAACAAGAT CCCCCTAACG TTCCATACCT ACCAGGATTC AGCAACCGGC
ACCGAAGTTG TGCGTTTAAC CCCGCCCGAT GTTATCTGCC ATCGCAATTA TTTCTACCAG
AAGTGTTTCT TCAACGACGG CAGCAAGCTG CTGTTTGGTG CTGCGTTTGA CGGCCCGTGG
AACTACTATC TGCTGGATTT AAAAGAGCAG AGCGCTACGC AGTTGACAGA AGGTAAAGGC
GACAACACCT TCGGTGGTTT CCTGTCTCCG AATGACGATG CGCTGTATTA CGTTAAAAAT
ACCCGTAATC TGATGCGTGT CGATCTGGCT ACGCTGGAAG AGAAAACAAT TTATCAGGTG
CCTGACGATT GGGTCGGCTA CGGTACTTGG GTTGCCAACT CAGATTGCAC CAAAATGGTC
GGTATTGAAA TCAAGAAAGA AGACTGGAAG CCACTGACCG ATTGGAAAAA ATTCCAGGAA
TTCTACTTCA CTAATCCTTG CTGCCGCCTG ATTCGTGTCG ATTTGGTCAC AGGCGAAGCG
CAGACCATCC TTCAGGAAAA CCAGTGGCTG GGTCACCCAA TCTACCGTCC GGGTGATGAC
AACACGGTTG CTTTCTGCCA CGAAGGCCCG CATGACCTGG TTGATGCCCG TATGTGGTTC
ATCAACGAAG ATGGCACCAA CATGCGTAAA GTGAAAGAGC ATGCTGAAGG CGAAAGCTGC
ACCCACGAAT TCTGGGTACC AGATGGTTCC GCGATGATCT ATGTCTCTTA CCTTAAAGAC
GATAGCAATC GCTATATCCG CAGCATCGAT CCGGTTACGC TGGAAGATCG TCAACTGCGT
GTCATGCCAC CGTGTTCTCA CCTGATGAGT AACTATGATG GCACGCTGTT GGTGGGTGAC
GGTTCCGATG CACCAGTAGA CGTACAGGAC GATGGCGGCT ACAAAATCGA GAACGATCCG
TTCCTGTATG TTTTCAACCT GAAAACCGGC AAAGAACACC GTATTGCACA GCACAATACA
TCATGGGAAG TATTGGAAGG GGACCGTCAG GTAACTCACC CACATCCTTC TTTCACGCCG
GATAATAAAC AAGTCCTGTT TACTTCTGAC GTAGATGGCA AACCTGCGCT GTATCTGGCG
AAGGTTCCTG ATTCAGTCTG GAACTAA
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| Protein sequence | MAKGNKIPLT FHTYQDSATG TEVVRLTPPD VICHRNYFYQ KCFFNDGSKL LFGAAFDGPW
NYYLLDLKEQ SATQLTEGKG DNTFGGFLSP NDDALYYVKN TRNLMRVDLA TLEEKTIYQV
PDDWVGYGTW VANSDCTKMV GIEIKKEDWK PLTDWKKFQE FYFTNPCCRL IRVDLVTGEA
QTILQENQWL GHPIYRPGDD NTVAFCHEGP HDLVDARMWF INEDGTNMRK VKEHAEGESC
THEFWVPDGS AMIYVSYLKD DSNRYIRSID PVTLEDRQLR VMPPCSHLMS NYDGTLLVGD
GSDAPVDVQD DGGYKIENDP FLYVFNLKTG KEHRIAQHNT SWEVLEGDRQ VTHPHPSFTP
DNKQVLFTSD VDGKPALYLA KVPDSVWN
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