| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1727 |
|---|
| Symbol | |
|---|
| ID | 8132669 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1993775 |
|---|
| End bp | 1995343 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644865015 |
|---|
| Product | Hydantoinase/oxoprolinase |
|---|
| Protein accession | YP_003017304 |
|---|
| Protein GI | 253688114 |
|---|
| COG category | [E] Amino acid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0145] N-methylhydantoinase A/acetone carboxylase, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.666608 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTACATA AAAATGATTA CCGACTCGGG ATTGATGTCG GCGGCACCAA CACGGATGCG
GCAATTTTAG ATGCGGATCT GCGCTGTATT GCGACGGCCA AATTTCCTAC CAGTCTGGAT
ATTTATAGCG GTATCGAACG GGTGATTGCT GAAGTATTGA CGCAGTCAGG TATCGAGCCG
CAGCATATTC GCTATGCGAT GTTGGGCACA ACACAATGTA CCAATGCGAT TGTTGAGCGG
AAAGGGCTGG ATCGCGTTGG TTTATTACGC CTGAGCCTGC CAAGCAGCGA TAGCGTTCCA
CCGCTATTTG GTTGGGATGA TGAATGGCAA GGGACATTAG GCGAGCATTT CTACCAAATT
CATGGTGGCT ATGAATTTGA TGGCCGAGAG ATTCACCCCA TACTGCAGGA TGAAGTCTTG
GCGGCGTGTG ACAGGATGCG CGGTCATGTG GATAGCGTGG CAATTTGTGG CGTATTCTCT
CCCGTAAACA ATAAGCAGGA GCAGCAGGTT GCCCAGTGGG TGAATGCAGC ACTGCCTGAT
GTTTCCGTGT CGTTATCCCA CCGGATAGGC AGCACCGGAT TACTGGAAAG GGAAAACGCG
ACAATCCTGA ATGCGTCGTT GCAAAGCACG GCAAACCGGT TTGTTAGTGG CTTTACGCAA
GCGCTAATCC GACATGGTAT TAAGGCTACG CCGTTCTTCG GGCAAAACGA CGGCACATTG
ATGTCCGAAA GTATGGTGAA GCAATATCCC ATTCTGACGA TGGCCTGTGG GCCAACGAAC
TCGATTCGCG GAGCGTGCCA CCTTTCCGGG CTGGATAATG CACTGATTAT TGATGTCGGT
GGCACGACGA CAGATATTGG CGTGTTGGTG AATGGCTTCC CGCGTGAGTC GGCTATCGCT
GTTGAAGTGG GCGATGTGCG AACGAATTTT AGAATGCCGG ATATTATTTC TATCGGCATT
GGCGGGGGAA CCTGTGTGCG GCAGTCTCAG GATGGGAAAC TCACGCTTGG ACCTGACAGC
GTCGGTTATC GCCTTCTTGA ACAGGGTGTC AGCTTTGGTG GGGAGACGTT AACGCTCAGC
GATATTATGC TGCAGCTTCA TCGCGAGCGA TGGACATCCG ATCTTCCTCG CCCGCTTCCT
GAGCTAGATA ATGTACTTTG TCAGCAGGCT TATCGTCAGA TGATTGATAA AGTGGAAAGT
GCTATCGATC GGATCAAATC GTCCAGCGCG GCTATTCCGG CGGTGCTTGT TGGTGGCGGC
AGTATTTTAT TGCCTGACGT TTTATCGGGT ATCAGTCAGG TCATGCGCCC GTTGAATTTT
GATGCGGCAA ATGCGGTAGG TGTGGCGCTA GGGAAGGTTG GCGCACAGAT TGAGCGTGTA
GTGAAAATGC CGGATAACGA TCGTGAGAAG ATCAAAAGCG AGCTGCAACA ACAGACGGTT
TGTCTTGCAG AAGAAACGGG TGCGATGCCG GGCAGCGTTG AAATCATCGA CTATCAGGAA
ATTCCGTTGG CGTATCTGCC AGGGAATGCG GTACAGGTGA AAATCAAGGC AGCAGGAAAT
CTGGCTTAG
|
|---|
| Protein sequence | MLHKNDYRLG IDVGGTNTDA AILDADLRCI ATAKFPTSLD IYSGIERVIA EVLTQSGIEP
QHIRYAMLGT TQCTNAIVER KGLDRVGLLR LSLPSSDSVP PLFGWDDEWQ GTLGEHFYQI
HGGYEFDGRE IHPILQDEVL AACDRMRGHV DSVAICGVFS PVNNKQEQQV AQWVNAALPD
VSVSLSHRIG STGLLERENA TILNASLQST ANRFVSGFTQ ALIRHGIKAT PFFGQNDGTL
MSESMVKQYP ILTMACGPTN SIRGACHLSG LDNALIIDVG GTTTDIGVLV NGFPRESAIA
VEVGDVRTNF RMPDIISIGI GGGTCVRQSQ DGKLTLGPDS VGYRLLEQGV SFGGETLTLS
DIMLQLHRER WTSDLPRPLP ELDNVLCQQA YRQMIDKVES AIDRIKSSSA AIPAVLVGGG
SILLPDVLSG ISQVMRPLNF DAANAVGVAL GKVGAQIERV VKMPDNDREK IKSELQQQTV
CLAEETGAMP GSVEIIDYQE IPLAYLPGNA VQVKIKAAGN LA
|
|---|
| |