Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1655 |
Symbol | |
ID | 8132597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1905195 |
End bp | 1906040 |
Gene Length | 846 bp |
Protein Length | 281 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644864943 |
Product | endonuclease IV |
Protein accession | YP_003017232 |
Protein GI | 253688042 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0648] Endonuclease IV |
TIGRFAM ID | [TIGR00587] apurinic endonuclease (APN1) |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0156974 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAATACA TCGGGGCACA CGTTAGCGCA TCTGGCGGGG TCGATCAGGC CGTGATTCGC GCTCATGAGA TAAAGGCGAC GGCTTTCGCG TTGTTTACCA AGAACCAGCG CCAATGGCAG GCTGCGCCGC TCAGCACCGA GGTCATCGAC CGTTTTAAAG CCGCCTGTGA ACAGTATGCC TATACGTCAG CACAAATTCT TCCCCACGAC AGTTACCTGA TTAATCTGGG ACACCCGGAC GCCGAGGCGT TAGAGAAATC ACGTATCGCG TTTATTGATG AAATGGCCCG CTGTCAGCAA CTTGGGCTCA GCCTGCTGAA TTTTCACCCA GGTAGCCATC TGAAACAGAT CGAAGAAGCA GACTGTCTGG CCCGTATTGC GGAGTCCATC AACATCGCGC TGGCGGAAAC GGACGGGGTC ACCGCCGTGA TTGAAAATAC CGCCGGACAA GGCAGTAATC TCGGATTCCG TTTTGAGCAT CTGGCGGCCA TCATTGACGG TGTAGAAGAT AAAAGCCGTG TTGGCGTCTG TATCGATACC TGTCATGCCT TCGCTGGCGG CTACGACCTA AGGACGGAAG CGGATTGCGA AGCGACCTTT GCAGAATTTG ATCGCATCGT TGGGTTTCGC TATCTGCGAG GAATGCATTT GAATGATGCG AAAAGCGCAT TCGCCAGTCG CGTTGACCGA CACCATAGCC TGGGAGAAGG CAATATCGGC AAAACGGCCT TCAGCTACAT CATGAAAGAT GCCCGTTTTG ATGGGATCCC AATGATTCTG GAGACAATCA ATCCCGATAT CTGGGCTGAC GAAATCGCCT GGCTCAAGTC CGAAGCCCAA TGTTAA
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Protein sequence | MKYIGAHVSA SGGVDQAVIR AHEIKATAFA LFTKNQRQWQ AAPLSTEVID RFKAACEQYA YTSAQILPHD SYLINLGHPD AEALEKSRIA FIDEMARCQQ LGLSLLNFHP GSHLKQIEEA DCLARIAESI NIALAETDGV TAVIENTAGQ GSNLGFRFEH LAAIIDGVED KSRVGVCIDT CHAFAGGYDL RTEADCEATF AEFDRIVGFR YLRGMHLNDA KSAFASRVDR HHSLGEGNIG KTAFSYIMKD ARFDGIPMIL ETINPDIWAD EIAWLKSEAQ C
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