Gene PC1_1519 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1519 
Symbol 
ID8132460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp1770198 
End bp1771373 
Gene Length1176 bp 
Protein Length391 aa 
Translation table11 
GC content56% 
IMG OID644864808 
ProductABC-2 type transporter 
Protein accessionYP_003017098 
Protein GI253687908 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.762827 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTTGAAC AGAATAGCGT TGAGCCGGAT AACACGAACC AGCACGGCAG CACGCATTTC 
TCCACGCGTC GCCTGCGGGC GCTGTGCCTG AAAGAAACCC GCCAAATCTT GCGTGACCCC
AGCAGCGGGC TGATCGCCTT CGTGATTCCG CTGTTGCTGC TGTTTATCTT CGGCTACGGC
ATTAATCTGG ACTCCAGTCG CCTGCACGTC GGTATCCTGA TGGAACAGCA AAGTGAGGAC
GCGCGCGATC TGGCGAATAC CTTTGCGGCA TCACCATTTA TTGAGCCGAC CATCAGCAAT
AATCGTCAAT TCCTGATTCA GCAGATGCAG GCAGGTAGCA TTCGCGGCCT GATCGTCATC
CCAACTGACT TTGCCGAACG GCTGGCACGG ACGGGCGATC GCGCCCCGAT CCAGGTCATC
ACCGACGGCA GCGAACCCAA CACGGCGAAT TTTGTGCAGG GATACGCGGA AGGCATTTGG
CTGTTGTGGC AACAACAGCG GGCGGAAGAT CGCGGCGAGA CGTTCGAACA GCTTATCGAG
GTGCAGTCGC GCTACTGGTT TAACCCGGCC GCCATCAGTC AACATTTCAT CATCCCCGGC
GCGATTACCA TCATTATGAC GGTGATTGGT GCCATCCTCA CCTCGCTGGT CATCGCCCGC
GAGTGGGAGC GCGGGACAAT GGAAGCTCTG CTCTCGACGC AGGTCACCCG TACCGAACTG
CTGCTGTCCA AACTCATCCC GTATTACTTT CTCGGGATGA TCGCCATGAC GCTGTGTATT
CTGGTCTCAA CGTTTATCAT GCAGGTGCCC TATCGCGGCT CGCTGATTTT GCTATTTATT
ATCAGCAGTC TGTTCCTTGC CAGCACGCTG GGCATGGGCC TGCTCATCTC CACCCTCACC
CGCAACCAGT TCAACGCCGC CATGGTGGCG CTGAATGCGG CATTTTTGCC TGCCATCATG
CTGTCCGGCT TTATTTTTGA AATCGACAGC ATGCCGGAAT TCGTCCGCGG CGTGTCATAC
ATCATCCCGG CGCGCTATTT CGTCAGCACA CTGCAAACGC TGTTTCTCGC GGGGAATATC
GGTACGGTGC TGATGACTAA CCTGCTGTTT CTCATTCTCT CGGCGATTGT CTTTATTGGC
CTGACGGCCT GGCAAACCCG GCGCAGGCTG GATTAG
 
Protein sequence
MVEQNSVEPD NTNQHGSTHF STRRLRALCL KETRQILRDP SSGLIAFVIP LLLLFIFGYG 
INLDSSRLHV GILMEQQSED ARDLANTFAA SPFIEPTISN NRQFLIQQMQ AGSIRGLIVI
PTDFAERLAR TGDRAPIQVI TDGSEPNTAN FVQGYAEGIW LLWQQQRAED RGETFEQLIE
VQSRYWFNPA AISQHFIIPG AITIIMTVIG AILTSLVIAR EWERGTMEAL LSTQVTRTEL
LLSKLIPYYF LGMIAMTLCI LVSTFIMQVP YRGSLILLFI ISSLFLASTL GMGLLISTLT
RNQFNAAMVA LNAAFLPAIM LSGFIFEIDS MPEFVRGVSY IIPARYFVST LQTLFLAGNI
GTVLMTNLLF LILSAIVFIG LTAWQTRRRL D