Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1519 |
Symbol | |
ID | 8132460 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1770198 |
End bp | 1771373 |
Gene Length | 1176 bp |
Protein Length | 391 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644864808 |
Product | ABC-2 type transporter |
Protein accession | YP_003017098 |
Protein GI | 253687908 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.762827 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTGAAC AGAATAGCGT TGAGCCGGAT AACACGAACC AGCACGGCAG CACGCATTTC TCCACGCGTC GCCTGCGGGC GCTGTGCCTG AAAGAAACCC GCCAAATCTT GCGTGACCCC AGCAGCGGGC TGATCGCCTT CGTGATTCCG CTGTTGCTGC TGTTTATCTT CGGCTACGGC ATTAATCTGG ACTCCAGTCG CCTGCACGTC GGTATCCTGA TGGAACAGCA AAGTGAGGAC GCGCGCGATC TGGCGAATAC CTTTGCGGCA TCACCATTTA TTGAGCCGAC CATCAGCAAT AATCGTCAAT TCCTGATTCA GCAGATGCAG GCAGGTAGCA TTCGCGGCCT GATCGTCATC CCAACTGACT TTGCCGAACG GCTGGCACGG ACGGGCGATC GCGCCCCGAT CCAGGTCATC ACCGACGGCA GCGAACCCAA CACGGCGAAT TTTGTGCAGG GATACGCGGA AGGCATTTGG CTGTTGTGGC AACAACAGCG GGCGGAAGAT CGCGGCGAGA CGTTCGAACA GCTTATCGAG GTGCAGTCGC GCTACTGGTT TAACCCGGCC GCCATCAGTC AACATTTCAT CATCCCCGGC GCGATTACCA TCATTATGAC GGTGATTGGT GCCATCCTCA CCTCGCTGGT CATCGCCCGC GAGTGGGAGC GCGGGACAAT GGAAGCTCTG CTCTCGACGC AGGTCACCCG TACCGAACTG CTGCTGTCCA AACTCATCCC GTATTACTTT CTCGGGATGA TCGCCATGAC GCTGTGTATT CTGGTCTCAA CGTTTATCAT GCAGGTGCCC TATCGCGGCT CGCTGATTTT GCTATTTATT ATCAGCAGTC TGTTCCTTGC CAGCACGCTG GGCATGGGCC TGCTCATCTC CACCCTCACC CGCAACCAGT TCAACGCCGC CATGGTGGCG CTGAATGCGG CATTTTTGCC TGCCATCATG CTGTCCGGCT TTATTTTTGA AATCGACAGC ATGCCGGAAT TCGTCCGCGG CGTGTCATAC ATCATCCCGG CGCGCTATTT CGTCAGCACA CTGCAAACGC TGTTTCTCGC GGGGAATATC GGTACGGTGC TGATGACTAA CCTGCTGTTT CTCATTCTCT CGGCGATTGT CTTTATTGGC CTGACGGCCT GGCAAACCCG GCGCAGGCTG GATTAG
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Protein sequence | MVEQNSVEPD NTNQHGSTHF STRRLRALCL KETRQILRDP SSGLIAFVIP LLLLFIFGYG INLDSSRLHV GILMEQQSED ARDLANTFAA SPFIEPTISN NRQFLIQQMQ AGSIRGLIVI PTDFAERLAR TGDRAPIQVI TDGSEPNTAN FVQGYAEGIW LLWQQQRAED RGETFEQLIE VQSRYWFNPA AISQHFIIPG AITIIMTVIG AILTSLVIAR EWERGTMEAL LSTQVTRTEL LLSKLIPYYF LGMIAMTLCI LVSTFIMQVP YRGSLILLFI ISSLFLASTL GMGLLISTLT RNQFNAAMVA LNAAFLPAIM LSGFIFEIDS MPEFVRGVSY IIPARYFVST LQTLFLAGNI GTVLMTNLLF LILSAIVFIG LTAWQTRRRL D
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