| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1377 |
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| Symbol | |
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| ID | 8132316 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1605676 |
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| End bp | 1607046 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 644864667 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_003016959 |
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| Protein GI | 253687769 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.489519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAGGACAC TAGCGAAATT CAGCTATGTA TTGATGGGGA TGCTATGTGC GGGCTGTACG
TTATTGCCCG TTCCTGATGA TGCCGCTTCC GAATTACCGG ATGCCTGGTC AATAGACGCG
GCTTCAGCGC TGAAGCCGCC AGATAAGGGG TGGTGGAAGG CTTTTGGCAG TCAGGAGTTG
AACTCGCTGT TGGAAGGGGC ACTGCTAGCC AATCGTAATC TTGATACTGT TCGCCAGAAC
ATGGAGCAAG CTCGTATTCA ATGGCAGAGC AGCCAGATGG CGAAAACACC AGAGGTGAAT
GGCGCATTTT CTAAGAATCT TTCGGGCGTT TGGGGAGAGC ATCAGCGGAA CAAAAGCTAT
GGCGCTAGCC TGTCGCTATC TTATTCTCCT GATGTCTGGG GAGCGAAACG CGCTGCCTCT
TATAGTAATG AAGCGTTGTG GCGAGCGGCA TCTTATGATG TTTCCGCGAC GGCATTAATG
TTGCGTTCGT CAGTAATTAC CCAATATTTA GCGCTGCTCG GCATCCGTCG TCAGATCGTA
CTGGCCGAGA AAAATTTGGA CATTAGCCGC AGATTGCTGA CCCTTGTGGA GACTAAATAT
GCCGCTGGCG CTGTCGCGAG ACTCGACCTT GCTCAACAAC AATCCTTTGT TGCGGGAATG
GAAGTGATGC TTCTGCAACT GCATCAGCAA TCTCGGCAGG TCAGCAAAAC GCTGGCGGCG
TTACTCGATA AAACGCCGCA GGAATTAATA CCGCCCAGTC AGCATATTGA AGATCTCCGC
ATGCCAGATA TTGGCAGCGG TCTTCCTGCG GACCTCATGC ACAAGCGCCC CGATCTGTTA
AGTGCGGAAG CCAAATTGGC TGCCGCGGGT GCCAATATTG ATGCGGCGCG AGCCGCAATG
TTTCCCTCGA TTTCCCTCTC GGCGACCTCC AGCGTGAGCG CGACGGGACT AAATCCGTTA
TTTCGGCTAG CGCCAGGGTG GGGCAGTGGT CTGGAGATTT CGTTACCGAT TTGGGATCGA
TCCGCTCGAG TGGATAATCA GCGTCTTGCC TTAATTAACC GAAAAATTGC GCTTAACGCC
TACAGAGAAG CACTGTTGAC GGCTTTTGGT GACGTCGAAA CGGCGCTCCA CGCGGTGTTG
AATTTACAGC AGCAGCAGCG CTGGCAAGAT GCACAGCTGG CGGCGGCACA GGACTCGCTA
AGGCTTGCTG AGATCCGCTA CAGAGCGGGT GCTGAGGATC TACAGCGTTT GCTAAACGCA
CAAAATGTGT TTTATAGCGC GGAGTTGGCA TCCAGCACAT TGTGGCAACA GAGGCTGCAA
GCCGCCAACG ATCTGGCTGT AGCACTTGGC GGCAGCGAGT TGCAGGAGTG A
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| Protein sequence | MRTLAKFSYV LMGMLCAGCT LLPVPDDAAS ELPDAWSIDA ASALKPPDKG WWKAFGSQEL
NSLLEGALLA NRNLDTVRQN MEQARIQWQS SQMAKTPEVN GAFSKNLSGV WGEHQRNKSY
GASLSLSYSP DVWGAKRAAS YSNEALWRAA SYDVSATALM LRSSVITQYL ALLGIRRQIV
LAEKNLDISR RLLTLVETKY AAGAVARLDL AQQQSFVAGM EVMLLQLHQQ SRQVSKTLAA
LLDKTPQELI PPSQHIEDLR MPDIGSGLPA DLMHKRPDLL SAEAKLAAAG ANIDAARAAM
FPSISLSATS SVSATGLNPL FRLAPGWGSG LEISLPIWDR SARVDNQRLA LINRKIALNA
YREALLTAFG DVETALHAVL NLQQQQRWQD AQLAAAQDSL RLAEIRYRAG AEDLQRLLNA
QNVFYSAELA SSTLWQQRLQ AANDLAVALG GSELQE
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