| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1350 |
|---|
| Symbol | |
|---|
| ID | 8132288 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1575574 |
|---|
| End bp | 1576620 |
|---|
| Gene Length | 1047 bp |
|---|
| Protein Length | 348 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644864640 |
|---|
| Product | diguanylate cyclase with GAF sensor |
|---|
| Protein accession | YP_003016933 |
|---|
| Protein GI | 253687743 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATA ATTTGCTTTC TCACCTCTCG AACGCATTAC GTTCAGAGGA TACCTTCGAG
GGGCTCGTTC GCCAGTTATT AGTCATGCTG GAACTGGTCA CCGATCTGGA ATCGACTTAC
CTGACGCAGG TTGACACCGA AGCGGGTTTC CAAAATATCC TGTTTGCTCA CAACACAAAA
ACGCTCAATA TTCCTGAAGG TGCTTCGGTG CCGTGGCATG ACACGCTGTG CAAACGGGCG
TTGGATGAAG GGCAAAGTTA CACGCCTAAT GTGACTGAAT GCTGGGGAGA TTCGGAGACG
GCGAAAGCGT TGGGTATCAT CACCTATGCC AGTACACCGG TACGCATGGA AGATGGGCAG
TTGTATGGCA CACTCTGTGC CGCAAGCTCC GATCATAAGC CGCTGACGAC TAAGGGTGAA
CAAATCCTGA GTTTATTCGC GCAGCTTATT GCTCAGCAAG TGCAGAAAGA GTGGCTGGTG
CAGCAGTTAA CAGCCGCAAA TGTCGCGTTA CATGAATATT CTTATACCGA TTCACTAACC
GGATTGCTTA ACCGCCGAGG CGTATTTTAT TCGCTGGAAG CACTGTTTTC TCAGGCCAAG
AATGACCATC AGCAGGCGCT TATTGTGTTC ATTGATCTTG ACGGCTTTAA GAAAATTAAC
GACCAGTTCA GTCATGAAGC GGGTGATATC TTCTTACAAG AAGTGGGTCA GCGTTTGCTT
ATGTGGGGCA ACCCTGGCGA TGTTGTCGGG CGTCTCGGTG GTGATGAGTT TGTTTTTGCC
CGTATGGTAA ACGTTGCGCC GGGAGAGAAC GAGCGTGTGA TGGCTTCTTT CAGAGATGAC
ATTACGCCCT TGTTACAGGG GAACTATTCT CTCGGTACGG TCAGTATTGA CTATTTGGGT
GCCAGCATCG GGATCGCCAC GGCAGACCCT TCCGTCGAGG AGCCTGATGG CGTGATTCGC
CGGGCTGATG CTGCAATGTA CGCCAATAAA GTCACGCGCA AAAAAGATCA AACCCGCGCT
TTTGACGTCA TCACTGCACA ATCGTAA
|
|---|
| Protein sequence | MTDNLLSHLS NALRSEDTFE GLVRQLLVML ELVTDLESTY LTQVDTEAGF QNILFAHNTK
TLNIPEGASV PWHDTLCKRA LDEGQSYTPN VTECWGDSET AKALGIITYA STPVRMEDGQ
LYGTLCAASS DHKPLTTKGE QILSLFAQLI AQQVQKEWLV QQLTAANVAL HEYSYTDSLT
GLLNRRGVFY SLEALFSQAK NDHQQALIVF IDLDGFKKIN DQFSHEAGDI FLQEVGQRLL
MWGNPGDVVG RLGGDEFVFA RMVNVAPGEN ERVMASFRDD ITPLLQGNYS LGTVSIDYLG
ASIGIATADP SVEEPDGVIR RADAAMYANK VTRKKDQTRA FDVITAQS
|
|---|
| |