| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1329 |
|---|
| Symbol | |
|---|
| ID | 8132267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1548132 |
|---|
| End bp | 1549193 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644864619 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_003016912 |
|---|
| Protein GI | 253687722 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.681295 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGCCT CACCGCCGAC GTTTTTGACG GTAGATGTAC GTCGCTCAGG GCTACGCTTT
TCCCAGCGGG TCTATATTCC ACGCATTGTC GGGACGATAC TGTGTTCTCT CTTTATTGCC
TCGGTGCTGA TTACCAAGCC TATACCGCTG TTATTGTGGG GGCTGCTCCT TCTTAACGCC
TTTGCCTGGC CTCACATTGC CTACCTGTTA TCCCTACGGT CGCGCGATCC TATGCGGTGC
GAGAAACGTA ATTTATTGTT TGATGTGGTG TTTGGCGGCA TCTGGATAGG GTTTATGGGC
GTGAATCTCC TGCCCAGCGC GGTGATTGCT GCGATGGTCG GGATGAACGG CACGGCCGGC
GGTGGAATCA AGCTATTTGT TCAGGGGATC CTATTACAGT GCGTTGCCTG CGTATCGGTG
CTTGTGCTGT TTGCGGTGCC GGTTTCACTC GATACGACAC CGATACAGAT TTATGCTTGT
GTGCCAATGT TGCTGATCTA CCCCATTTTT CTGGGTTATG TCACTTATAA CACCGCGCTG
AAGCTGGCGG AGCACAAACG TATGCTGATG GAAGTCAGTA TCCATGACGG GATGACCAAC
CTCTATAACC GCCACCACTG GGAACGTTTG CTGAAACACG AGTTCGACCT TTGTCAGCGC
TACAAGCGCA CGGCGACGTT AGTCCTGTTT GATATCGACC ATTTTAAAGC CTTTAACGAT
AACTTTGGGC ACAACGTCGG CGATCAGGCG ATACTGCTAC TGGCGCGCGA GCTGACATCT
GGTTTTCGTG AAACGGATGT GATTGGGCGG TTTGGCGGAG ATGAATTCGC CGTTATTTTG
CCGCAGACCA GCGCGGGAGA GGCGTTGGAT GCTGTGAGTC GTATTCGGGA GAGTTTGTCG
CTGAAGTTCC TGAACCAAAC GCCGCAGTTG GCGGTGTTTG TCAGCGTCGG TATCGCAGAG
ATTTCGCCGG AAATGGGTCA ATATATGGAC TGGTTAAAGT CAGCGGATAT GGCGCTCTAT
CGGGCAAAAA ATAAAGGTCG TCGCCGAACC GAAGTTGCCT GA
|
|---|
| Protein sequence | MSASPPTFLT VDVRRSGLRF SQRVYIPRIV GTILCSLFIA SVLITKPIPL LLWGLLLLNA
FAWPHIAYLL SLRSRDPMRC EKRNLLFDVV FGGIWIGFMG VNLLPSAVIA AMVGMNGTAG
GGIKLFVQGI LLQCVACVSV LVLFAVPVSL DTTPIQIYAC VPMLLIYPIF LGYVTYNTAL
KLAEHKRMLM EVSIHDGMTN LYNRHHWERL LKHEFDLCQR YKRTATLVLF DIDHFKAFND
NFGHNVGDQA ILLLARELTS GFRETDVIGR FGGDEFAVIL PQTSAGEALD AVSRIRESLS
LKFLNQTPQL AVFVSVGIAE ISPEMGQYMD WLKSADMALY RAKNKGRRRT EVA
|
|---|
| |