Gene PC1_1275 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1275 
Symbol 
ID8132212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp1485227 
End bp1486297 
Gene Length1071 bp 
Protein Length356 aa 
Translation table11 
GC content54% 
IMG OID644864565 
ProductXylose isomerase domain protein TIM barrel 
Protein accessionYP_003016859 
Protein GI253687669 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1082] Sugar phosphate isomerases/epimerases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAACGT TAAAAGGACC GGGTATTTTT CTCGCCCAGT ATATTGGCGA TCAGGCTCCC 
TTTAACACGC TGGAAAATCT GGCGCAATGG GCAGCCGGAT TAGGCTTTAA AGCGCTGCAA 
ATTCCCTGTA ACCATCCACA TATTTTCGAT CTGGCGACGG CCGCCGATAG CCAAACTTAT 
TGTGATGAGG TGAAAGGCCT GCTGGCACAG CACGGGCTGA CCATCAGCGA ACTGTCGACC 
CATCTGGAAG GACAGCTCGT TGCCGTCCAC CCCGCGTATG ACGATGCCTT TGATGATTTC 
GCCCCCCCAG CCTACCGTCG CAATCCGCAA GCTCGCCAAC AGTGGGCTAT CGCGGCAATC 
AAGCAGGCAG CAAAAGCCTC TTCACGCTTA GGGCTAAACG CTCACGCTAC GTTTTCCGGT 
GCGCTGGCCT GGCCTTATTT TTACCCCTGG CCACCGCGTA AAGACGTCCT GATCCAGGAG 
GCTTTTAAAG AACTCGGCCG TCTGTGGACG CCGATCCTAG ACTGTTTTGA CGAGTACGGT 
GTGGACGTGT GCTACGAGCT TCACCCCGGA GAAGATTTGC ACGATGGCGT GACCTTTGAA 
CGCTTCCTTG ATGTCGTCAA TCACCATCCG CGCGCCAACA TTCTTTACGA TCCCAGCCAT 
ATGCATTTGC AGCAGATGGA CTACCTCGGT TTTATCGATC GTTACCATGC GCGAATCAAA 
GCGTTCCATG TGAAAGATGC GGAATTTACC GCATCGAGCA AAAGCGGCGT GTATGGCGGC 
TATCAGTCAT GGGCGGAACG CGCCGGGCGT TTCCGTTCAC CGGGAGATGG TCAGATCGAT 
TTTGGCGCAA TTTTCAGCAA ACTCGCTCAG TACGATTACG ACGGCTGGGC CGTACTGGAG 
TGGGAATGCT GCCTGAAAGA CAGTAATTGC GGCGCGAAAG AAGGGGCGGC GTTTATCAAT 
CGCCATATTA TTCCCGTCGC TCAGCGCGCT TTTGACGATT TCGCCGTCAC CCGCGACGAT 
CGTCCGTTGG TCCGAAAAAT GTTGGGATTA AAAGAGGAGA ACGCAGGATG A
 
Protein sequence
MKTLKGPGIF LAQYIGDQAP FNTLENLAQW AAGLGFKALQ IPCNHPHIFD LATAADSQTY 
CDEVKGLLAQ HGLTISELST HLEGQLVAVH PAYDDAFDDF APPAYRRNPQ ARQQWAIAAI 
KQAAKASSRL GLNAHATFSG ALAWPYFYPW PPRKDVLIQE AFKELGRLWT PILDCFDEYG 
VDVCYELHPG EDLHDGVTFE RFLDVVNHHP RANILYDPSH MHLQQMDYLG FIDRYHARIK 
AFHVKDAEFT ASSKSGVYGG YQSWAERAGR FRSPGDGQID FGAIFSKLAQ YDYDGWAVLE 
WECCLKDSNC GAKEGAAFIN RHIIPVAQRA FDDFAVTRDD RPLVRKMLGL KEENAG