| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1260 |
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| Symbol | |
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| ID | 8132197 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1470221 |
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| End bp | 1471714 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644864550 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_003016844 |
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| Protein GI | 253687654 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACAAAA CCGTAACGAA AAAATCACTG ATGTTTAGCC TGATAACGCT GGCTATCCTC
AGCGCGGGGG GCGTGGGCTA CCTGCTAGGC AAACAGCACG CACCACTTGC TCCCTCTGTC
GCAAAGCCGG AACGTACCGT CCTCTATTGG TACGACCCGA TGGTGCCGGA TAAACGTTTC
GACAAGCCGG GAAAATCACC CTTTATGGAT ATGGAACTGG TGCCCCGCTA TGCCGATGAA
GCACAGGATG ACGGCGGTAT CACCGTCAGT GCCCGCCAGC AGCAAAATCT TGGCGTTCGC
ACAGCGCGTG TGGAAATGCG CGAACTTGCC AACCACAGTA CGGGTTACGG CACCGTCGCG
ATCAACGAGC GTGGATTGCA CACGCTGGTC GCGCCCAGCG GCGGCATTGT CGAAAAACTC
ACAGTCAATG CACTGCAACA GCAGGTGAAG AAAGGCGAGA CGCTCGCCAC GTTGTGGAAC
CCGACCTGGG CGGCGGCGCA GCGTGAATAT CTGGCGGTAC GACAGTTGGG CGACGACGTT
CTGACCCAAT CAGCCCGCCA GCGGCTAGCA CTGCTGTTCA TGTCGGAAAC GGTTATTCGT
CAGGTCGAGC GTAGCGGCAA GCCGCAGGAT CGAATCACCA TTACCGCGCC GGAAGACGGC
TACGTGAATA AGCTTGAAGT ACGGCAAGGC ATGCAGTTAA GCCCTGCCCA GCCGTTATTT
GAACTTGCCA ACCTGAATCC GGTTTGGGTC GATGTAGATT ACCCCGAGGC TCAGGCGGCT
CAGCTCACTA TCGGCAACGA TATCAGCGCC GCCAGCAATG CCTGGCCGGG TAAAACCTTC
CACGGCAAGA TCAGCGAACT GTTGCCTGTG CTGGATAGCA CCACGCGCAC GCTAAAAGCG
CGCGTCGTAC TCGACAATCC GCAGCAGCAG CTTAAACCCG GCATGTATCT CACCGTACAA
CTTTCTCACG CTCAGGCACA GCCGCGTCTG GCGATCCCAC AGGAAGCACT ATTGGTCAGT
GGAAGCCAAA ATCGGGTCTT GCTGAGCGAT GGCAATGGCC ATTTCACTCC GCGTAACGTC
ACTGCGGGCG CGTCGCTAGG CGATTGGGTC GAAATCATTG ATGGCTTGAA GGTTGACGAC
AGCGTGGTCA CCTCCGGTCA GTTCCTGATT GATTCCGAAG CCAGCCTGCG CAACGCCCTG
CCACAATTTA CTACTGACAC ATCGGCAGCA CCCGCTGCTC CCGTCGGCTA TCAAACTCAG
GGTGTGATCA AAGCGATAAA TGGCAATCAG GTCACCATTG AACATGAAGC CGTTCCGGCG
CTCAACTGGT CGCCGATGAC GATGGATTTC ACGCTGCCAT CGTCAGGGTT GCCTCAAGGA
GTGGGAATCA GCAGCACCGT CAGTTTCCAG TTCAACATGG ACGACAATGG GATACACGTC
CTGCATTTTT TACCCGCTGA CGATCCGCAT GCCGGACACG GAGGCCATCC ATGA
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| Protein sequence | MNKTVTKKSL MFSLITLAIL SAGGVGYLLG KQHAPLAPSV AKPERTVLYW YDPMVPDKRF
DKPGKSPFMD MELVPRYADE AQDDGGITVS ARQQQNLGVR TARVEMRELA NHSTGYGTVA
INERGLHTLV APSGGIVEKL TVNALQQQVK KGETLATLWN PTWAAAQREY LAVRQLGDDV
LTQSARQRLA LLFMSETVIR QVERSGKPQD RITITAPEDG YVNKLEVRQG MQLSPAQPLF
ELANLNPVWV DVDYPEAQAA QLTIGNDISA ASNAWPGKTF HGKISELLPV LDSTTRTLKA
RVVLDNPQQQ LKPGMYLTVQ LSHAQAQPRL AIPQEALLVS GSQNRVLLSD GNGHFTPRNV
TAGASLGDWV EIIDGLKVDD SVVTSGQFLI DSEASLRNAL PQFTTDTSAA PAAPVGYQTQ
GVIKAINGNQ VTIEHEAVPA LNWSPMTMDF TLPSSGLPQG VGISSTVSFQ FNMDDNGIHV
LHFLPADDPH AGHGGHP
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