| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1223 |
|---|
| Symbol | |
|---|
| ID | 8132158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1429777 |
|---|
| End bp | 1430736 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644864511 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003016807 |
|---|
| Protein GI | 253687617 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3272] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.53904 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTAA AACTCATCCC TGTTGGTATC AGCGCCTGTC TGCTCGGTAA TCCCGTACGG
TTTGATGGCG GACACAAGCG TCTGGAATTT GCCGTTGAAC AACTGGCGCC CTATTTTCGT
TTTGAACCGG TCTGCCCGGA AATGGCGATT GGTTTACCGG TGCCGCGCCC GGCACTCAGA
CTGGTGCGAG AAGGGGAAAG CCACATTACG CTGCGCGCCA GCAATGGTTC GCCGCTGGAT
GTCACTCAGC AGATGGCAGT GTTTTCTGCT GATAAAGTCA GCCAGCTTCA GCACTTATGC
GGTTATATCG TCTGCGCCAA GTCGCCAAGC TGCGGCATGG AACGCGTAAA GATCTACGAT
GAAGCGCAAA AGAATGCGCG TAAAAGCGGA ATTGGCCTGT TTACGCAGGA ACTGATGCGG
CAAATGCCCT GGCTACCCGT TGAGGAAGAC GGACGCCTGC ACGATCCCGG CTTGCGGGAG
AATTTTATTG CACGCGTTTA TGCATTACAT GAACTGAATC AGCTATGGCA AGACGGGCTG
AGTCGTGGCG CGCTCATTGC CTTTCATAGC CGCTATAAAT TGCTGCTGCT GGCGCATTCT
CAGCCGGAAT ACCGTGAACT GGGGCCGTTT GTTGCGGGAA TCGATAAGTG GGATTCACTG
GAAGACTACG TTGTTGAATA CCGGAAACGG CTCATGAAAC TGCTGTCGAC GCCTGCGACG
CGGCGCAATC ACACCAATGT GCTGATGCAC GTGCAGGGCT ATTTCCGGCG CCAGCTTAAT
TCCCAACAGC GGCAGGAACT GTCGCAGCTC ATCGATCGCT ATCGGCAAGG TTTTCAACCG
CTATTGGCGC CGATCACGCT GCTGAAACAT TACATGGCGG AATACCCCGA TGCGTATCTG
GCTCAGCAGC GTTACTTTGA GCCGTACCCG GAGGCATTAC GCCTGCGTTA CGGACACTAG
|
|---|
| Protein sequence | MTLKLIPVGI SACLLGNPVR FDGGHKRLEF AVEQLAPYFR FEPVCPEMAI GLPVPRPALR
LVREGESHIT LRASNGSPLD VTQQMAVFSA DKVSQLQHLC GYIVCAKSPS CGMERVKIYD
EAQKNARKSG IGLFTQELMR QMPWLPVEED GRLHDPGLRE NFIARVYALH ELNQLWQDGL
SRGALIAFHS RYKLLLLAHS QPEYRELGPF VAGIDKWDSL EDYVVEYRKR LMKLLSTPAT
RRNHTNVLMH VQGYFRRQLN SQQRQELSQL IDRYRQGFQP LLAPITLLKH YMAEYPDAYL
AQQRYFEPYP EALRLRYGH
|
|---|
| |