Gene PC1_0920 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0920 
Symbol 
ID8131846 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp1066750 
End bp1067994 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content53% 
IMG OID644864201 
ProductN-acetylmuramoyl-L-alanine amidase 
Protein accessionYP_003016506 
Protein GI253687316 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0860] N-acetylmuramoyl-L-alanine amidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCATT CGAATCATCA TCTGACTCGA CGACGTCTAT TACAAAGCGC AGCAGCAACC 
TGGCTGTTAA GCGTAAGCGG TGTCGGGATG GCGGCGACCA CACAGGTCGT TGCCGTGCGC
GTCTGGCCAT CCTCCGCCTA TACCCGCGTC ACACTGGAAT CCAATCACCC GCTGAAATAT
AACCAGTTTA GTCTCAGTAA CCCTGAACGT ATCGTGGTGG ATATTGAAAA TGTTCATCTG
AACAGCGTAT TGAAGGAAAT AGCCAGCCAG TTTCAGCAGG ATAATGACCC GTTGATTAAA
GAGGCGCGCA TCGGCCAGTT TGATAAAAGC ACGGTGCGTT TGGTGCTGGA ACTCAAGCAG
CAGGCGACGA CCAAAGTCTT TACGCTGGGG CCGGTGGCCG AATTCAAGCA TCGACTGGTA
CTGGATTTGT ACCCTGCCGC AGGACGCTAC GACAACGAAG AAGATCCGCT GCTGGCGCTG
TTGGAGGATT ACAACAAGGG CGAACTGGAG CGCACGTTGC CCGCAGAAGC GCCGAAAGCC
GGGAAGGCAG GGCGGGATCG TCCGCTGATT ATTATGCTCG ACCCCGGTCA CGGCGGTGAA
GATCCTGGTG CGATTGGCAA GAATAAAACG TGTGAGAAGG ACATCGTGCT GCAAATCGCT
CGCCGCCTGC GCAAGTTGAT CGATAATGAA TCCAACATGA AGGCATATAT GACGCGCAAT
GAAGATGTGT TCATTCCGCT GCGCGTGCGG GTGGCGAAAG CGCGCAAGCA GCGTGCCGAT
CTATTCATTT CGATTCATGC GGATGCGTTT ACCAATCGAG CGGCAAGAGG ATCGTCGGTT
TTTGCGCTCT CGAAGAAAGG CGCAACCAGT ACCGCCGCCA GATTTCTGGC AGAAACTCAG
AACGAATCGG ATTTGATCGG CGGCGTAAGC ATGAGCGGCG ATCGCTATCT GGATCACACC
ATGTTCGATT TGGTGCAGAC CGTCACTATC AGCGATAGCC TGAAGTTTGG TAAAGAGATC
CTGACCCGCT TAGGCAAGGT GAATCGTCTG CATAAAAACA GTGTCGATCA GGCTGGCTTT
GCAGTACTAA AAGCGCCGGA TATTCCGTCT GTGCTGGTTG AGACGGCCTT TATCAGTAAC
CTAGAGGAAG AGCGCAAGCT GCGCACCAGC CATTTCCAGC AGCAAATTGC CGAATCCATT
TTTGCAGGCA TTAAAGCCTA CTTTGCCAGT CAGACTCAGC GGTAG
 
Protein sequence
MSHSNHHLTR RRLLQSAAAT WLLSVSGVGM AATTQVVAVR VWPSSAYTRV TLESNHPLKY 
NQFSLSNPER IVVDIENVHL NSVLKEIASQ FQQDNDPLIK EARIGQFDKS TVRLVLELKQ
QATTKVFTLG PVAEFKHRLV LDLYPAAGRY DNEEDPLLAL LEDYNKGELE RTLPAEAPKA
GKAGRDRPLI IMLDPGHGGE DPGAIGKNKT CEKDIVLQIA RRLRKLIDNE SNMKAYMTRN
EDVFIPLRVR VAKARKQRAD LFISIHADAF TNRAARGSSV FALSKKGATS TAARFLAETQ
NESDLIGGVS MSGDRYLDHT MFDLVQTVTI SDSLKFGKEI LTRLGKVNRL HKNSVDQAGF
AVLKAPDIPS VLVETAFISN LEEERKLRTS HFQQQIAESI FAGIKAYFAS QTQR