Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0920 |
Symbol | |
ID | 8131846 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1066750 |
End bp | 1067994 |
Gene Length | 1245 bp |
Protein Length | 414 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644864201 |
Product | N-acetylmuramoyl-L-alanine amidase |
Protein accession | YP_003016506 |
Protein GI | 253687316 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGTCTCATT CGAATCATCA TCTGACTCGA CGACGTCTAT TACAAAGCGC AGCAGCAACC TGGCTGTTAA GCGTAAGCGG TGTCGGGATG GCGGCGACCA CACAGGTCGT TGCCGTGCGC GTCTGGCCAT CCTCCGCCTA TACCCGCGTC ACACTGGAAT CCAATCACCC GCTGAAATAT AACCAGTTTA GTCTCAGTAA CCCTGAACGT ATCGTGGTGG ATATTGAAAA TGTTCATCTG AACAGCGTAT TGAAGGAAAT AGCCAGCCAG TTTCAGCAGG ATAATGACCC GTTGATTAAA GAGGCGCGCA TCGGCCAGTT TGATAAAAGC ACGGTGCGTT TGGTGCTGGA ACTCAAGCAG CAGGCGACGA CCAAAGTCTT TACGCTGGGG CCGGTGGCCG AATTCAAGCA TCGACTGGTA CTGGATTTGT ACCCTGCCGC AGGACGCTAC GACAACGAAG AAGATCCGCT GCTGGCGCTG TTGGAGGATT ACAACAAGGG CGAACTGGAG CGCACGTTGC CCGCAGAAGC GCCGAAAGCC GGGAAGGCAG GGCGGGATCG TCCGCTGATT ATTATGCTCG ACCCCGGTCA CGGCGGTGAA GATCCTGGTG CGATTGGCAA GAATAAAACG TGTGAGAAGG ACATCGTGCT GCAAATCGCT CGCCGCCTGC GCAAGTTGAT CGATAATGAA TCCAACATGA AGGCATATAT GACGCGCAAT GAAGATGTGT TCATTCCGCT GCGCGTGCGG GTGGCGAAAG CGCGCAAGCA GCGTGCCGAT CTATTCATTT CGATTCATGC GGATGCGTTT ACCAATCGAG CGGCAAGAGG ATCGTCGGTT TTTGCGCTCT CGAAGAAAGG CGCAACCAGT ACCGCCGCCA GATTTCTGGC AGAAACTCAG AACGAATCGG ATTTGATCGG CGGCGTAAGC ATGAGCGGCG ATCGCTATCT GGATCACACC ATGTTCGATT TGGTGCAGAC CGTCACTATC AGCGATAGCC TGAAGTTTGG TAAAGAGATC CTGACCCGCT TAGGCAAGGT GAATCGTCTG CATAAAAACA GTGTCGATCA GGCTGGCTTT GCAGTACTAA AAGCGCCGGA TATTCCGTCT GTGCTGGTTG AGACGGCCTT TATCAGTAAC CTAGAGGAAG AGCGCAAGCT GCGCACCAGC CATTTCCAGC AGCAAATTGC CGAATCCATT TTTGCAGGCA TTAAAGCCTA CTTTGCCAGT CAGACTCAGC GGTAG
|
Protein sequence | MSHSNHHLTR RRLLQSAAAT WLLSVSGVGM AATTQVVAVR VWPSSAYTRV TLESNHPLKY NQFSLSNPER IVVDIENVHL NSVLKEIASQ FQQDNDPLIK EARIGQFDKS TVRLVLELKQ QATTKVFTLG PVAEFKHRLV LDLYPAAGRY DNEEDPLLAL LEDYNKGELE RTLPAEAPKA GKAGRDRPLI IMLDPGHGGE DPGAIGKNKT CEKDIVLQIA RRLRKLIDNE SNMKAYMTRN EDVFIPLRVR VAKARKQRAD LFISIHADAF TNRAARGSSV FALSKKGATS TAARFLAETQ NESDLIGGVS MSGDRYLDHT MFDLVQTVTI SDSLKFGKEI LTRLGKVNRL HKNSVDQAGF AVLKAPDIPS VLVETAFISN LEEERKLRTS HFQQQIAESI FAGIKAYFAS QTQR
|
| |