| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0876 |
|---|
| Symbol | |
|---|
| ID | 8131802 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 1019661 |
|---|
| End bp | 1020884 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644864157 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003016462 |
|---|
| Protein GI | 253687272 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5441] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGGAAGTA AAGTTGGCAG CGTTTATATT GCAAGTACAG CTGATACTAA AGGGAAAGAA
CAGATTTACG TTCGCGATCT GATTGCCACG ACAGGCTTGA AAACCGTCAC GGTCGATCTG
TCAACGACAC GTCCGTCAAC GGATGCTCGG GTGTCAGAGA CGATAGATAT CAGCGCAGAA
ACGGTGGCAT CGTACCACCC ACAGGGCGCA TCAGCCGTGT TTTGCCATGA CAGAGGGCAG
GCAATTGGTG CCATGGCCGT TGCGTTTGAG CACTTTATGT TGTCCCGCGA TGATATTGCC
GGGGTAATCG GGCTGGGCGG CTCCGGCGGT ACGGCGTTGA TCACGCCCGC GATGCAGGCA
TTACCGATTG GCATGCCGAA ACTGATGGTG TCGACGATGG CTTCCGGCGA TATCTCCGGC
TACATCGGTG CCAGCGACAT CAGCATGATG TATTCCGTTA CCGATGTAGC GGGTCTGAAC
CGCATTTCTC GACAGGTTCT TGGCAACGCG GCGCACCAGA TCGCCGGTGC TGTGAAGTTT
CATATTCAGG AACATCATGA AGATAAGCCC GCGATTGGCT TGACCATGTT TGGCGTAACG
ACGCCGTGCA TTCAGGAAGC CAGTGCATTG CTGGAAGCGG AGTTTGACTG TCTGGTTTTT
CATGCGACGG GCAGCGGCGG GAAAGCGATG GAAAAGCTGG TGGACAGCCA TTTGCTTACC
GGTGTGCTCG ATCTCACGAC GACGGAAGTG TGTGATTTAC TGTTTGATGG CGTGCTGGCC
TGCGGGCCGG AACGGTTTGA CGCGATAGCC AAGACGCAGG TGCCTTACGT GGCATCCTGC
GGGGCGCTGG ACATGGTGAA TTTTGGCGCC CCCGCCAGCA TACCGGAGAA ATACGCGCAT
CGTCTGTTCT ACAACCACAA CGCACAGGTC ACTCTGATGC GTACCACAAT AGACGAGAAT
ATCGCGATGG CGCGCTGGAT TGGGGAGAAG CTTAACCGCT GTGAAGGCGA AGTGCGCTTC
CTGATCCCCG AAGGCGGCTT CTCTGCGCTG GATGCGCCGG AACAGGCATT CTGGCATCCG
GAAGCGCGTG ACGCGTTTAT CAGCACGCTG GAGAGCGTCG TGCAGCAAAC GGCAAGACGA
AAGATTATTC GTCTGCCTTT CCATATTAAC GATCCTTTAT TTGCCCATGC GGCTGTCGAT
GCGTTTCGGG CGTTAGTGAA ATAA
|
|---|
| Protein sequence | MGSKVGSVYI ASTADTKGKE QIYVRDLIAT TGLKTVTVDL STTRPSTDAR VSETIDISAE
TVASYHPQGA SAVFCHDRGQ AIGAMAVAFE HFMLSRDDIA GVIGLGGSGG TALITPAMQA
LPIGMPKLMV STMASGDISG YIGASDISMM YSVTDVAGLN RISRQVLGNA AHQIAGAVKF
HIQEHHEDKP AIGLTMFGVT TPCIQEASAL LEAEFDCLVF HATGSGGKAM EKLVDSHLLT
GVLDLTTTEV CDLLFDGVLA CGPERFDAIA KTQVPYVASC GALDMVNFGA PASIPEKYAH
RLFYNHNAQV TLMRTTIDEN IAMARWIGEK LNRCEGEVRF LIPEGGFSAL DAPEQAFWHP
EARDAFISTL ESVVQQTARR KIIRLPFHIN DPLFAHAAVD AFRALVK
|
|---|
| |