| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0672 |
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| Symbol | |
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| ID | 8131596 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 777959 |
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| End bp | 778918 |
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| Gene Length | 960 bp |
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| Protein Length | 319 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644863957 |
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| Product | type II secretion system protein |
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| Protein accession | YP_003016263 |
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| Protein GI | 253687073 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.139102 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGTTT TTGACGATCC CTTACTGCTG CTGGCGCTTG TGCTGATGGT GGTCGGGATT
TACCTGGCAC GTACACAGCA TAAAACACAG CAATACAAGC AGTTGGAAAT TCGCATGCGC
GGGCATCTGC CCGTCGCCTC TATAGAGGCG GCCTCTCAGG AAAACATCCT GAGAGGCCAG
GGAACCACAT TATCTCCCCT GCTGGAGAAG CTGTTACAGC CCATTGCCAC GCAGGGCGAG
CGCCTGTCGG GATCGGAGCG CGATCGCCGC AACCTGCGCC GCCTGCTGGA TCTGGCCGGG
ATCCGTCGCA ACGAAGCGGT AGGCTGGCTG GTGATGGGAA AATTTGCCGC CGGTGCGCTG
TTCGCTATCG CGCTGGTGTG GGGATGGTTG CCGCCTGCTG ACCGTGCGGG GCTGACGGGC
GTTGCGGCGG GGCTGATTGG CTTCTTTGTC GGTTCTATGG TGCCGGAGTG GTGGCTGAAG
TGGCGTGCGG CAAGCCGAGG CGAAAAGCTG GCGCGAGCGG TGCCGGATGC GCTGGATCTG
ATGGTGGTCT GTGCCGAAGC TGGTCTGCCT ATCGGGCGCG TGTTGCAGGT GGTATCGAAG
GAACTGGGGC TGTCTTCACC GGAGATGGCG GATGAATTGC ACTATACCGC CGCCGAATTA
CAGATCCTGT CGGATCGTAC GCTGGCGATG AAACATCTGG CGGAGCGAAC CCGCGTCAGC
GAGATCGAAA GTATGGTGGC GACGCTGATT CAGGCGGAGC GCTACGGTAC GCCGCTGTCT
CAGGCGTTGC GCACGATTGC GGATGAAAGC CGCAAGACGC TGATTCTGAG TCTGGAAGAG
AAGGCGGGTA AATTGCCAGC GCAGCTGAGC GTGCCGCTGA TGGCACTCAT TCTGCCACCG
ATTATCGCCA TTATGGCGTC GCCTGCACTG GTGCGAGTGG TCCGCCTGCT GGCGCAATAG
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| Protein sequence | MTVFDDPLLL LALVLMVVGI YLARTQHKTQ QYKQLEIRMR GHLPVASIEA ASQENILRGQ
GTTLSPLLEK LLQPIATQGE RLSGSERDRR NLRRLLDLAG IRRNEAVGWL VMGKFAAGAL
FAIALVWGWL PPADRAGLTG VAAGLIGFFV GSMVPEWWLK WRAASRGEKL ARAVPDALDL
MVVCAEAGLP IGRVLQVVSK ELGLSSPEMA DELHYTAAEL QILSDRTLAM KHLAERTRVS
EIESMVATLI QAERYGTPLS QALRTIADES RKTLILSLEE KAGKLPAQLS VPLMALILPP
IIAIMASPAL VRVVRLLAQ
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