Gene PC1_0665 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0665 
Symbol 
ID8131589 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp770500 
End bp771051 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content56% 
IMG OID644863950 
Productpeptidase A24A prepilin type IV 
Protein accessionYP_003016256 
Protein GI253687066 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4960] Flp pilus assembly protein, protease CpaA 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.153139 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCGGATT ACACGCACTG GCCGCAGACG GCATTGCTGA TGGGCTGCCT GCTGTGGTGT 
ATCAGTACCG ACCTGTTAGT ACGCAAAATT ACCAATCGGG CGGTACTGAT TTTATTGCTG 
GGCTGGCTGT TCTTCAGCGC TTCACATGTC CTGCAATCCG GTGCGTTAGA TATGTTGGCA 
TTACGGAAAA CGCTTTGGGC GCTGCCAGGT GCGGCGGCGG TATTGGTTGT GGGTTTTTTG 
CTTTTCCTCA CCGGCAGACT CGGTGCTGGG GATGTCAAGC TGATGAGTGT GCTGTGCCTG 
TGGGTTGGGC AAGGGCACCA GATCGTTTTC GTCATGGTGA CGGCGCTGGC TGGCGGTGTG 
TTGGCGCTTA GCCTGCCGCT GCTGAATACC GTACCCACAG CTGTGGCGAT GGGCATTCAA 
ACCACCAACC GGATATTCAA GAGTCGGTTG CCTATGCCAC CCGCGTTGCC CGCCGACCTT 
TCTCAAGGCA TACCTTACGG CGTCGCCATT GCGTTCGGCG CGATGTATGT CCTGATTTTT 
CCCTTGTTTT AA
 
Protein sequence
MADYTHWPQT ALLMGCLLWC ISTDLLVRKI TNRAVLILLL GWLFFSASHV LQSGALDMLA 
LRKTLWALPG AAAVLVVGFL LFLTGRLGAG DVKLMSVLCL WVGQGHQIVF VMVTALAGGV 
LALSLPLLNT VPTAVAMGIQ TTNRIFKSRL PMPPALPADL SQGIPYGVAI AFGAMYVLIF 
PLF