| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0644 |
|---|
| Symbol | |
|---|
| ID | 8131567 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 745883 |
|---|
| End bp | 747211 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644863928 |
|---|
| Product | metabolite/H+ symporter, major facilitator superfamily (MFS) |
|---|
| Protein accession | YP_003016235 |
|---|
| Protein GI | 253687045 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCA CCACCATCAC TCCCACGCTC GATGCGGAAG CGGAAGCGCC ACCCGTAAAC
TCACGCAACA AAGTGATTGT TGCGTCGCTG ATTGGCACCG CCATCGAATT TTTCGATTTT
TATATCTATG CCACTGCCGC GGTGCTGGTT TTCCCGCACA TTTTCTTCCC GCAGGGCGAT
CCGACTGCCG CCACACTACA ATCACTGGCC ACTTTTGCGA TTGCCTTTGT AGCCCGCCCT
ATTGGCTCGG CGGTGTTCGG TCACTTCGGC GACCGTGTCG GACGTAAAGT CACGCTGGTC
GCTTCTCTGC TGACCATGGG GATTTCAACC GTTCTGATTG GACTGTTACC AACCTACGAA
ACCATTGGTA TTTTTGCACC GATTCTTCTG GCACTGGCAC GCTTCGGTCA GGGTCTGGGG
CTGGGCGGTG AATGGGGTGG CGCGGCGCTG CTGGCGACGG AGAATGCCCC ATCCCATAAA
CGTGCGCTGT ATGGGTCGTT CCCCCAGCTT GGCGCCCCGA TTGGCTTCTT CTTCGCAAAC
GGCACCTTCC TGCTGTTGTC CTGGCTGCTG ACGGAAGAGC AGTTCATGAG TTGGGGCTGG
CGCGTACCGT TCGTCGCATC CGCCGCGCTG GTGCTGGTTG GCCTGTATGT TCGTATCTCT
CTGCATGAAG CTCCGGTCTT TACCAAAGCG GTCAAAGCTG GCAAACAGGT ACGCATGCCG
CTGGGAACGC TGCTTAGCAA ACATATGAAA GTCACGATCC TCGGCACCTT CATCATGCTG
GCGACCTACA CATTGTTCTA CATCATGACC GTTTATTCCA TGACGTACGG CACTTCGCCT
GTGCCTAAAG GGCTTGGCTT CTCACGTAAC AGTTTCTTGT TGATGCTGAT GATCGCAGTG
ATCGGTTTTG GTCTGATGGT GCCAGTCGCA GGCTATCTGG CAGATGCCTT TGGCCGCCGT
AAGACCATGA TTACCATTAC TTGCCTCATG ATCGTCTTTG CCATGCTGTT CCCTTATATG
CTCGGTTCAG GCAATCAGGC GCTGGTGATG GGCTTCCTGG TGCTGGGTCT GAGCATCATG
GGACTGACGT TCGGCCCGAT GGGTGCCTTG CTGCCGGAGC TGTTCCCGAC AGAAGTACGC
TACACCGGCG CGTCATTCTC CTATAACGTC TCGTCGATTC TGGGTGCATC GGTCGCACCG
TACATCGCAG CATGGTTGAC GGCCAACTAC GGCCTGTTCT ACGTCGGCGT TTATCTGGCG
GCCATGGCGT CACTGACGCT GATTGCGCTG CTGGCGACCA GAGAAACACG TCACCAGTCT
TTGGGATAA
|
|---|
| Protein sequence | MQATTITPTL DAEAEAPPVN SRNKVIVASL IGTAIEFFDF YIYATAAVLV FPHIFFPQGD
PTAATLQSLA TFAIAFVARP IGSAVFGHFG DRVGRKVTLV ASLLTMGIST VLIGLLPTYE
TIGIFAPILL ALARFGQGLG LGGEWGGAAL LATENAPSHK RALYGSFPQL GAPIGFFFAN
GTFLLLSWLL TEEQFMSWGW RVPFVASAAL VLVGLYVRIS LHEAPVFTKA VKAGKQVRMP
LGTLLSKHMK VTILGTFIML ATYTLFYIMT VYSMTYGTSP VPKGLGFSRN SFLLMLMIAV
IGFGLMVPVA GYLADAFGRR KTMITITCLM IVFAMLFPYM LGSGNQALVM GFLVLGLSIM
GLTFGPMGAL LPELFPTEVR YTGASFSYNV SSILGASVAP YIAAWLTANY GLFYVGVYLA
AMASLTLIAL LATRETRHQS LG
|
|---|
| |