Gene PC1_0526 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0526 
Symbol 
ID8131443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp606561 
End bp607244 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content51% 
IMG OID644863804 
ProductSNARE associated Golgi protein 
Protein accessionYP_003016117 
Protein GI253686927 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATTAA TCAAAGAACT GTTAAACGCA CTCTGGCATC AGGATTTCGA TATTTTAGCC 
GACCCGAAGT TGGTATGGAC CATCTACATT TTGCTGTTTC TGATTATCTT TCTGGAAAAT 
GGCCTGCTCC CGGCGGCTTT CCTGCCCGGC GATAGCCTGC TCATTTTGGT CGGCGTTCTC 
GTCGCCAAAG GCACAATGAA TTACCCGTTT ACCCTATTTC TCCTGACGAC GGCCGCCAGC 
CTCGGCTGCT GGGCCAGCTA CATTCAGGGG AGATGGCTTG GCAATACCAG TGTGGTTCAG 
GGCTGGCTAT CGCATTTACC CGCACACTAT CACCAGCGTG CCCACCAACT CTTCCACCGC 
CATGGTCTAT CCGCGCTTTT AGTTGGCCGT TTTCTGGCTT TTGTCAGAAC GTTATTACCT 
ACCATCGCTG GCCTGTCAGG CCTGAATAAC GCGCGTTTTC AGTTCTTTAA CTGGATGAGT 
GGATTCCTGT GGGTATTTAT TCTGGTGACG CTGGGCTTCG CCTTAGGGAA AACCACGGTT 
TTCCTGAAAT ATGAAGACGA ACTCATGCTT TGCCTGATGT TGCTGCCGCT GGCGCTGCTG 
TTTATCGGGC TGTTTGGCTC ACTCTTTGTG CTATGGCGCA AAAAACGCGA CACGAAAGCC 
AGTAATGCAG AGAAAGGGAG CTAA
 
Protein sequence
MELIKELLNA LWHQDFDILA DPKLVWTIYI LLFLIIFLEN GLLPAAFLPG DSLLILVGVL 
VAKGTMNYPF TLFLLTTAAS LGCWASYIQG RWLGNTSVVQ GWLSHLPAHY HQRAHQLFHR 
HGLSALLVGR FLAFVRTLLP TIAGLSGLNN ARFQFFNWMS GFLWVFILVT LGFALGKTTV 
FLKYEDELML CLMLLPLALL FIGLFGSLFV LWRKKRDTKA SNAEKGS