| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0421 |
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| Symbol | |
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| ID | 8131336 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 484772 |
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| End bp | 485611 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644863699 |
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| Product | transcriptional activator RhaS |
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| Protein accession | YP_003016013 |
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| Protein GI | 253686823 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.600459 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGTTAC TTCGTGGTGA TGATTTTTTT ACTTCGCGTG CCGTAACGGT GGCGGTAGAA
CCGCGTACTC CGCAAACGGC TTTTCCTGAG CACTACCATG ATTTCTGGGA GATTGTGCTG
GTGGAGCAGG GCGCAGGCGT CCATGTGTTT AACGATCAGC CTTATGCACT GTGCAGCGGT
TCGGTGTTCT TTGTTCGTGA TAACGATCGG CATCTGTTTG AAGACGTGGA AGGGCTGTGT
CTGACTAACA TGCTGTATCG CTCGCCGCGC GGGTTCCGCT TCCTTTCCGA TATCGCCGCA
TTCTTGCCGT ATGGCCCGAA CGGCGAGTGG CAGGGGCAGT GGCAGGTCAA TGCCGCGGGG
ATGCAGCAGT TGAAGCAGTC GTTGAACAGT CTGGCAGAAC TGGCGCAGAG CGATGCACCG
GAAGCGATTG CCGCCAGTGA GAGCCTGTTT CTGCACATTC TGGTGCAATT GCGTCAACAG
TGCTTTCAGA CGCAGAGCAG TGGTTCCGAG CGTCAGGGAG TACAGGCGTT GCTGGGTTGG
TTGCAAAACA ACTACAGCGA AGAGGTGAAC TGGGGCAGTC TGGCCGATCG GTTCTCGCTG
CCGCTGCGCA CGCTGCATCG TCAGCTCAAA CAACACACCG GTATGACGCC ACAACGCTAT
CTGAATCGGT TAAGATTACT GGAGGCACGT CGGCGGTTGC AGCAGAGTGA TGATTCCATC
ACCACCATTG CGCACGCCTG TGGATTTAGC GACAGCAATC ACTTCTCGAC GCAATTCCGC
AAGGCATTCT CGCAGGCGCC TAAGTCACTA CGCCATCAGG CGTTTTCTCG TGAAGAGTAG
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| Protein sequence | MTLLRGDDFF TSRAVTVAVE PRTPQTAFPE HYHDFWEIVL VEQGAGVHVF NDQPYALCSG
SVFFVRDNDR HLFEDVEGLC LTNMLYRSPR GFRFLSDIAA FLPYGPNGEW QGQWQVNAAG
MQQLKQSLNS LAELAQSDAP EAIAASESLF LHILVQLRQQ CFQTQSSGSE RQGVQALLGW
LQNNYSEEVN WGSLADRFSL PLRTLHRQLK QHTGMTPQRY LNRLRLLEAR RRLQQSDDSI
TTIAHACGFS DSNHFSTQFR KAFSQAPKSL RHQAFSREE
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