| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0420 |
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| Symbol | rhaB |
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| ID | 8131335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 482946 |
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| End bp | 484436 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644863698 |
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| Product | rhamnulokinase |
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| Protein accession | YP_003016012 |
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| Protein GI | 253686822 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1070] Sugar (pentulose and hexulose) kinases |
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| TIGRFAM ID | [TIGR00148] UbiD family decarboxylases
[TIGR02627] rhamnulokinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.354453 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGTGA AGAATATCGT GGCGGTGGAT TTAGGTGCAT CCAGTGGTCG GGTCATGCTG
GCAACCTTGC ACACCGCAAC GCAGCATCTG ACGCTGAAAG AAATTCACCG TTTCAGCAAT
ACGCTGGTGT TTCAGGACAA TCATCACCAG TGGGATCTCG CCGCGCTGGA ACGCGATATC
CTCACCGGGT TACACCAAAT CGATGCCATG GGTATCGTTC CCGATAGCAT CGGGATCGAC
AGTTGGGGCG TCGATTACGT GCTACTCGAT CAGGACGGAC AGCGTGTCGG CCTGCCGTAT
TCCTATCGCG ACCACCGCAC CGACGGCGTG ATGGCTACCG TCACCGCCGA ACTGGGACGT
GAAGCTATCT ATCAGCGTAC CGGCATTCAA TTCCTGCCAT TTAATACGCT GTACCAGCTT
AAAGCGCTGT GCGATGCGCC ATCTGACGAT CTGCATCAGG TGGCACACCT GCTGATGATT
CCCGACTATT TTCACTATCG CCTCACGGGA AGTCTGGTCT GCGAATACAC CAACGCCAGC
ACGACCCAAC TGCTTAGCCT CGAAAAGAAA ACCTGGGACA GCGAACTACT GGACTATCTG
GGTGTACCAC GTCGCTGGTT GAGCGATCCG GTACAGCCGG GGCACGCTGT AGGGAAATGG
GCTGCGCCGA GCGGACGGCA GATTTCCGTC ACCGCCGTCG CCACGCACGA TACCGCCAGC
GCAGTGGTTG GCGCGCCGTT ACAGAGCCGC GACAGCGCCT ATCTCAGCTC CGGCACCTGG
TCGCTGATGG GTATTGAGAG CGACACGCCA TTTAACAGCC CGCAGGCGCT AGCTGCCAAT
ATCACCAACG AAGGCGGCGT AGACGGCACC TATCGGGTGC TGAAAAACAT CATGGGACTG
TGGCTGCTAC AGCGGGTTTG TCAGGAGCGT GACATCAAGG ACTTAGGCGC GCTGATTGAG
GCCGCCGCCG CCCTGCCCGC TTTCGCCAGC CTGATTAACC CTAATGACGA TCGCTTTATC
AATCCGCCAT CCATGCATCA GGCGATCCGC GATTATTGCC GTGAGCACGG CCAGCCGGTG
CCCCACAGCG ATGCCGAGCT GGCACGCTGC ATCTTTGACA GCCTCGCGCT GCTCTACCGA
CAGGTAGTAC TGGAACTGGG CGAACTGCGC CACGCACCGA TCCGCCAGCT GCACATTGTC
GGCGGCGGCA GCCAGAACGC TTTCCTGAAC CAGCTGTGCG CCGATGTGTG CCAAATTCCA
GTTCTAGCCG GGCCGGTCGA AGCTTCGACG CTTGGCAATA TCGGCTGCCA GTTGATGGCG
CTGGGCGCCG TCGCCGACCT TGCCGCATTC CGGCACATGC TGACTCATAA CTTCCCTTTG
CATCGCTATA CCCCGCGTGC GGAGAGTGAT TTTGCCGGGC ACTGGCGTCG TTTTCAGGCG
CTCAGCCAGC CAGAAACCGC CCCGAAGGGC AAAAAGGAGA CCACGCAATG A
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| Protein sequence | MAVKNIVAVD LGASSGRVML ATLHTATQHL TLKEIHRFSN TLVFQDNHHQ WDLAALERDI
LTGLHQIDAM GIVPDSIGID SWGVDYVLLD QDGQRVGLPY SYRDHRTDGV MATVTAELGR
EAIYQRTGIQ FLPFNTLYQL KALCDAPSDD LHQVAHLLMI PDYFHYRLTG SLVCEYTNAS
TTQLLSLEKK TWDSELLDYL GVPRRWLSDP VQPGHAVGKW AAPSGRQISV TAVATHDTAS
AVVGAPLQSR DSAYLSSGTW SLMGIESDTP FNSPQALAAN ITNEGGVDGT YRVLKNIMGL
WLLQRVCQER DIKDLGALIE AAAALPAFAS LINPNDDRFI NPPSMHQAIR DYCREHGQPV
PHSDAELARC IFDSLALLYR QVVLELGELR HAPIRQLHIV GGGSQNAFLN QLCADVCQIP
VLAGPVEAST LGNIGCQLMA LGAVADLAAF RHMLTHNFPL HRYTPRAESD FAGHWRRFQA
LSQPETAPKG KKETTQ
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