Gene PC1_0340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0340 
Symbol 
ID8131254 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp394519 
End bp395178 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content56% 
IMG OID644863620 
ProductSNARE associated Golgi protein 
Protein accessionYP_003015935 
Protein GI253686745 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGTGG TTCACGACAT TATTCAGGCG CTCTGGCAGC AGGATTTTAG TGCACTGGCC 
GATCCCCACG TCATCTGGGT GGTCTATGGC ATTCTGTTCA CGACGCTGTT TCTGGAGAAC 
GGTCTGCTAC CTGCCTCTTT TCTGCCCGGC GATAGCCTCC TGCTGCTCAC CGGTGCCATG 
ATTGCCAAAG GCGTAATGAG CTTTTTCCCT ACGATGATCC TGCTCACCAT CGCTGCCAGC 
CTCGGCTGCT GGCTCAGCTA CCTTCAAGGG CGCTGGCTGA GCGATACGCG TCTGGTAAAG 
GGCTGGCTAT TACAGCTTCC CGCTCACTAT CACCAACGCG CCCATCATCT GTTCCACCGC 
CACGGCCTGA TGGCGCTGCT GGTTGGCCGC TTTTTAGCAT TTATCCGCAC GCTGCTGCCG 
ACGATGGCCG GTATTTCCGG GTTAAATAAT ACGCGTTTTC AAATCTTTAA CTGGCTCAGC 
GGGTTGCTGT GGGTCGGGGG GATTGTCACG CTCGGCTATG CGCTCAGCCA CATTCCGCTG 
GTCAAACGCT ATGAAGATCA GGTGATGACC GCGCTGATCC TGCTCCCGAT TATTTTGCTG 
ATCAGTGGCC TGATTGGCAT GGCTGTCGTG GTGTGGCGTA AAAAACGTGC CGTCGCCTAA
 
Protein sequence
MSVVHDIIQA LWQQDFSALA DPHVIWVVYG ILFTTLFLEN GLLPASFLPG DSLLLLTGAM 
IAKGVMSFFP TMILLTIAAS LGCWLSYLQG RWLSDTRLVK GWLLQLPAHY HQRAHHLFHR 
HGLMALLVGR FLAFIRTLLP TMAGISGLNN TRFQIFNWLS GLLWVGGIVT LGYALSHIPL 
VKRYEDQVMT ALILLPIILL ISGLIGMAVV VWRKKRAVA