| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0288 |
|---|
| Symbol | |
|---|
| ID | 8131201 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 333821 |
|---|
| End bp | 334933 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644863568 |
|---|
| Product | serine endoprotease |
|---|
| Protein accession | YP_003015883 |
|---|
| Protein GI | 253686693 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02038] periplasmic serine pepetdase DegS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.275018 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGCTA AATTATTACG TTCAGCACTC TTTGGTGCCC TCGTCGCCGG TATTATTCTG
GCCATACTCC CCTTTATCGG GTCTGGTACG TCGTTTCTGA AAAGCAGCGA CAGACAGACG
GATGGTTCGC CTATCAGCTA CCATCAGGGA GTCAGTCGTG CGGCACCGGC TGTGGTTAAC
ATTTACAACC GGGTTGCCAA TCAAGAAAAG CCCAGTGAAG TCGCTATTCA TCCTCTGGGA
TCTGGCGTCA TCATGAATGA AAAAGGGTAT ATTTTAACCA ACAAGCATGT GATTAATAAC
GTGCAACAAA TCCAGATAGA ACTGTCAGAC GGCAGGCTGT ACGAAGCCCG TGTGATCGGT
TCCGATTCCT TGACCGACCT GGCCGTGTTG CAAATTGATG GCGTCAATCT GCCCGTTATT
CCGATAAATG CAGACCGTAT ACCGCACGTC GGCGATGTCG TGATGGCAAT CGGCAACCCT
TACAATCTGG GGCAGACCAT CACGCAGGGT ATCATCAGTG CCACTGGTCG CGTCAGCCTC
AGCGCTTATG GCCAGCAGCG AAGCCAGGTC GGACGCCAAA ACTTGCTGCA GACCGATGCG
TCCATTAACC ACGGCAACTC CGGCGGCGCG CTCGTCAATA CGCTCGGCGA ACTGGTCGGT
ATTAATACCC TTTCTTTTGA TAAAAGCAGC AACGGCGAAA CGCCGGAAGG CATTAGTTTT
GCGATCCCCG TGGCGCTGGC TACCAAGGTG ATGGGCAAGC TCATCCGCGA TGGTCGCGTG
GTGCGTGGCT ATATTGGCGT CAACGGCGTA CAGATCGAGA ATATAGAGAA CAGCACGTTG
GCCAACAATC GTGGTGTTCA GGGGCGATTA AGCGGTATTC TCGTTCAGAC TATCGACCCA
GGCGGGCCTG CGGATAAAGC GGGTATACGT GTCGAAGACG TCATCGTGAG TGTGAACAAT
AAGCCTGCAC GCTCAATTAT TGAAACCATG GAACAGGTTT CAGAAATACA CCCCGGCACC
GTCATTCCCG TCACGATTGA GCGTAATAAC GATAACAACG ATACTAAGCA AATCACGCTA
CAAATGACGA TCCAGGAATT TCCCACTCAA TAG
|
|---|
| Protein sequence | MLAKLLRSAL FGALVAGIIL AILPFIGSGT SFLKSSDRQT DGSPISYHQG VSRAAPAVVN
IYNRVANQEK PSEVAIHPLG SGVIMNEKGY ILTNKHVINN VQQIQIELSD GRLYEARVIG
SDSLTDLAVL QIDGVNLPVI PINADRIPHV GDVVMAIGNP YNLGQTITQG IISATGRVSL
SAYGQQRSQV GRQNLLQTDA SINHGNSGGA LVNTLGELVG INTLSFDKSS NGETPEGISF
AIPVALATKV MGKLIRDGRV VRGYIGVNGV QIENIENSTL ANNRGVQGRL SGILVQTIDP
GGPADKAGIR VEDVIVSVNN KPARSIIETM EQVSEIHPGT VIPVTIERNN DNNDTKQITL
QMTIQEFPTQ
|
|---|
| |